PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.1864
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family LBD
Protein Properties Length: 229aa    MW: 23895.3 Da    PI: 8.5474
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.1864genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.28.5e-3622109187
                         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 
                                    +C aCk+lrrkC++dC++apyf  ++ +++fa +hk+FGasnv+kll+++p ++r +a+ +++yeA+ar+rdPvyG+v++
  evm.model.AsparagusV1_07.1864  22 PCGACKFLRRKCVSDCIFAPYFRCDDgAARFASIHKVFGASNVSKLLSHVPAQDRCEAVVTIAYEAQARIRDPVYGCVAH 101
                                    7*********************665559**************************************************** PP

                         DUF260  80 ilklqqql 87 
                                    il+lq+q+
  evm.model.AsparagusV1_07.1864 102 ILALQHQV 109
                                    ******98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MANSAGTDSG SGSRSGSGSG SPCGACKFLR RKCVSDCIFA PYFRCDDGAA RFASIHKVFG  60
ASNVSKLLSH VPAQDRCEAV VTIAYEAQAR IRDPVYGCVA HILALQHQVL AIIQCSFLNA  120
VNCNVALRCV LASFDLTDVG VFLGCDSAST GDASQRSVSS WYGGISSDVC CRSMAGEQAA  180
SRALNMASGS HIQAGNLPCP RRARLVAALM GCQCKRRAAM RSSQLNPS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.12e-47LBD family protein