PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_07.1864 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 23895.3 Da PI: 8.5474 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.2 | 8.5e-36 | 22 | 109 | 1 | 87 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C aCk+lrrkC++dC++apyf ++ +++fa +hk+FGasnv+kll+++p ++r +a+ +++yeA+ar+rdPvyG+v++ evm.model.AsparagusV1_07.1864 22 PCGACKFLRRKCVSDCIFAPYFRCDDgAARFASIHKVFGASNVSKLLSHVPAQDRCEAVVTIAYEAQARIRDPVYGCVAH 101 7*********************665559**************************************************** PP DUF260 80 ilklqqql 87 il+lq+q+ evm.model.AsparagusV1_07.1864 102 ILALQHQV 109 ******98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MANSAGTDSG SGSRSGSGSG SPCGACKFLR RKCVSDCIFA PYFRCDDGAA RFASIHKVFG 60 ASNVSKLLSH VPAQDRCEAV VTIAYEAQAR IRDPVYGCVA HILALQHQVL AIIQCSFLNA 120 VNCNVALRCV LASFDLTDVG VFLGCDSAST GDASQRSVSS WYGGISSDVC CRSMAGEQAA 180 SRALNMASGS HIQAGNLPCP RRARLVAALM GCQCKRRAAM RSSQLNPS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 2e-47 | LBD family protein |