PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_07.1838 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB | ||||||||
Protein Properties | Length: 268aa MW: 30292.6 Da PI: 7.8592 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.1 | 2.3e-09 | 14 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ +++ G+g g++R++k+c++rw++yl evm.model.AsparagusV1_07.1838 14 KGPWSPEEDTKLKEFIEKNGTG---------GLKRCGKSCRLRWLNYL 52 79********************.........889************97 PP | |||||||
2 | Myb_DNA-binding | 38.4 | 2.9e-12 | 59 | 101 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++++Ed ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ evm.model.AsparagusV1_07.1838 59 GDFSEDEDRIICTLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 101 689******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence |
MGRAPCCDKS KVKKGPWSPE EDTKLKEFIE KNGTGGLKRC GKSCRLRWLN YLRPNIKHGD 60 FSEDEDRIIC TLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGI PASQRKSNQQ 120 IKQQQQQQQQ FVFSSSTNKN IANSSSLTSH HLFDAHDLSH QYQTEDQRSN LLVFGGQDQS 180 SSSSDGLEES GFENNYIYGG FDGMNNPLLC NQEPSWIDLG GNYGEIKHAI SLNDGYTSLL 240 QEPSSANISF KTQERDMYSH NFNIHWS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-65 | MYB family protein |