PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.1659
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family Trihelix
Protein Properties Length: 276aa    MW: 31094 Da    PI: 8.3538
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.1659genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.75.4e-1729117186
                       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergfer...spkqCkekwenlnkrykkikegekkrtse 74 
                                    +W++  v +L+ea++ ++   +r+klk+++We+v++++   +e g +r   +++qCk+k e+++kry+++ + ++++   
  evm.model.AsparagusV1_07.1659  29 EWSEGAVTCLLEAYEAKWVLRNRAKLKGQDWEDVARQVsarAESGSSRstkTATQCKNKVESMKKRYRNEVAAAGRG--- 105
                                    5*************************************9995555555222899*********************97... PP

                       trihelix  75 ssstcpyfdqle 86 
                                    s s++p+f++l+
  evm.model.AsparagusV1_07.1659 106 SGSRWPLFSKLD 117
                                    4567*****997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MEGQPKEQQL EETASAAPLP PRLNPKRDEW SEGAVTCLLE AYEAKWVLRN RAKLKGQDWE  60
DVARQVSARA ESGSSRSTKT ATQCKNKVES MKKRYRNEVA AAGRGSGSRW PLFSKLDGLV  120
RCQSGSRALV VADDKIASCD QGAEEEEAAT AVQEEYTEGD KEQPPEMNKE PDQKVQSCNS  180
SKETQHIQRK REKRKRTKEE GCEVAESIRW LTDAILRVEQ MRMESMRDME KIRAETEAKK  240
AEMELKRTEI LANTQLQIAK LFAKKSNGDK ANFLA*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.12e-62Trihelix family protein