PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_07.1659 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | Trihelix | ||||||||
Protein Properties | Length: 276aa MW: 31094 Da PI: 8.3538 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 53.7 | 5.4e-17 | 29 | 117 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergfer...spkqCkekwenlnkrykkikegekkrtse 74 +W++ v +L+ea++ ++ +r+klk+++We+v++++ +e g +r +++qCk+k e+++kry+++ + ++++ evm.model.AsparagusV1_07.1659 29 EWSEGAVTCLLEAYEAKWVLRNRAKLKGQDWEDVARQVsarAESGSSRstkTATQCKNKVESMKKRYRNEVAAAGRG--- 105 5*************************************9995555555222899*********************97... PP trihelix 75 ssstcpyfdqle 86 s s++p+f++l+ evm.model.AsparagusV1_07.1659 106 SGSRWPLFSKLD 117 4567*****997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence |
MEGQPKEQQL EETASAAPLP PRLNPKRDEW SEGAVTCLLE AYEAKWVLRN RAKLKGQDWE 60 DVARQVSARA ESGSSRSTKT ATQCKNKVES MKKRYRNEVA AAGRGSGSRW PLFSKLDGLV 120 RCQSGSRALV VADDKIASCD QGAEEEEAAT AVQEEYTEGD KEQPPEMNKE PDQKVQSCNS 180 SKETQHIQRK REKRKRTKEE GCEVAESIRW LTDAILRVEQ MRMESMRDME KIRAETEAKK 240 AEMELKRTEI LANTQLQIAK LFAKKSNGDK ANFLA* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 2e-62 | Trihelix family protein |