PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.1501

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

CO-like

Protein Properties

Length: 540aa MW: 60797.6 Da PI: 5.3385

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.1501	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.2	8e-09	228	271	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +++ + ++fC +++ lC +C +e H++ H ++p evm.model.AsparagusV1_07.1501 228 LLCNSCSSAPSSIFCSSDGLVLCSNCDFEAHSRdglsahHGRRP 271 68*****************************8888888776655 PP
2	CCT	57.5	4.8e-20	491	535	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R+ ++RYkeKrk R+++K irYesRKa+A+sR R+KGrF+k+++ evm.model.AsparagusV1_07.1501 491 RDSVISRYKEKRKMRRYDKLIRYESRKARADSRVRIKGRFAKANQ 535 77889*************************************875 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MVGERSTQRI RTEYLTAVLR QDIGFFDTEV TTGDVMHGIS SDVAQIQEVM GEKFAGTINL 60 KAPSEAILSI CKIVSPISAS VPAGVVLMKE KPGFKFTTRV QPFRLSEWDI DDKITFFMSG 120 RSYTLREYEK MANKVFARRY SSAGCLPTKY LEEEFWHEIA YGKTETVEYA CDIDGSAFSS 180 SPTDELGKSK WNLKAILYCR ADDARLCLSC DRHVHQANSV CSRHPRALLC NSCSSAPSSI 240 FCSSDGLVLC SNCDFEAHSR DGLSAHHGRR PVEAFSGCPS AVELVSVLGF GGNQEIIKKK 300 KENEEEDDYL LGEEGGFKWE MPEVVRLDDL IVPVSDSCCG FQAIGVPPLP KDRNLACGKN 360 KEEILHQLRE LINSESPLGN DHEELYPESE FKSLLQLNNV EQQQDNLHID VNEVATFTET 420 PNFEACQLQW NNNDWQEATD PVLYPYSEQS EKFPDVTTSI PDGAVNFHQI HGENLSPLTP 480 KRALELLCPD RDSVISRYKE KRKMRRYDKL IRYESRKARA DSRVRIKGRF AKANQEPKL*

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MVGERSTQRI RTEYLTAVLR QDIGFFDTEV TTGDVMHGIS SDVAQIQEVM GEKFAGTINL  60
KAPSEAILSI CKIVSPISAS VPAGVVLMKE KPGFKFTTRV QPFRLSEWDI DDKITFFMSG  120
RSYTLREYEK MANKVFARRY SSAGCLPTKY LEEEFWHEIA YGKTETVEYA CDIDGSAFSS  180
SPTDELGKSK WNLKAILYCR ADDARLCLSC DRHVHQANSV CSRHPRALLC NSCSSAPSSI  240
FCSSDGLVLC SNCDFEAHSR DGLSAHHGRR PVEAFSGCPS AVELVSVLGF GGNQEIIKKK  300
KENEEEDDYL LGEEGGFKWE MPEVVRLDDL IVPVSDSCCG FQAIGVPPLP KDRNLACGKN  360
KEEILHQLRE LINSESPLGN DHEELYPESE FKSLLQLNNV EQQQDNLHID VNEVATFTET  420
PNFEACQLQW NNNDWQEATD PVLYPYSEQS EKFPDVTTSI PDGAVNFHQI HGENLSPLTP  480
KRALELLCPD RDSVISRYKE KRKMRRYDKL IRYESRKARA DSRVRIKGRF AKANQEPKL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	3e-54	CO-like family protein