PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.1491
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family ARF
Protein Properties Length: 614aa    MW: 68137.4 Da    PI: 6.7632
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.1491genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3681.3e-21124225199
                                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                                    f+k+lt sd++++g +++ k++a+e+       +++++  ++l+ +d +g +W +++iyr++++r+++t+GW+ Fv++++
  evm.model.AsparagusV1_07.1491 124 FCKILTASDTSTHGGFSVLKRHADEClpqldmtQNPPA--QELVAKDFHGTRWGFRHIYRGQPKRHLITTGWSTFVNSKK 201
                                    99****************************97555544..48************************************** PP

                                    --TT-EEEEEE-SSSEE..EEEEE-S CS
                             B3  74 LkegDfvvFkldgrsefelvvkvfrk 99 
                                    L +gD +++   + +++el+v+v+r+
  evm.model.AsparagusV1_07.1491 202 LAAGDAFILI--RGENGELRVGVRRA 225
                                    ******9999..459999*****985 PP
2Auxin_resp98.78.4e-33250332183
                     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWr 80 
                                    a ha++t+++F+v+Y+Pr+s+seF+v+++++++++k+ + vG++f+m++e+ d +e r++G++++v+d +p  Wp+SkW+
  evm.model.AsparagusV1_07.1491 250 ARHAINTGTMFSVYYRPRTSPSEFIVSYDRYMESMKIDYLVGTKFRMKVEGRDGQEERYAGVIISVEDREPATWPDSKWK 329
                                    679***************************************************************************** PP

                     Auxin_resp  81 sLk 83 
                                    +Lk
  evm.model.AsparagusV1_07.1491 330 CLK 332
                                    *96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    
MVGSSNAEEN QQDGNDYLYN ALWRACAGPL VSIPCIDDKV FYFPQGHIEE IAAHSSRDGD  60
RQLPNYDLPS KILCRVVNVE LQAERDTDEV VAHVTLIPQS EDESTSERET VQVSAAPQQT  120
VVSFCKILTA SDTSTHGGFS VLKRHADECL PQLDMTQNPP AQELVAKDFH GTRWGFRHIY  180
RGQPKRHLIT TGWSTFVNSK KLAAGDAFIL IRGENGELRV GVRRALKRQS LASLSVISAH  240
SMQIGVLASA RHAINTGTMF SVYYRPRTSP SEFIVSYDRY MESMKIDYLV GTKFRMKVEG  300
RDGQEERYAG VIISVEDREP ATWPDSKWKC LKVQWAERAD KATGVQPERV SPWEIMPFSA  360
ATGSSSSTSR PKRQRAAHLP SRSESSSSQR DGSLMLSTEL AARHDDVLQG QEKIARGLSF  420
HVDSNETGNA HMRFHEQNQK GTEGPSCSRQ HELHQENKAF KLFGVSIPAN SVCSILPHSA  480
TSGEIQKPLT EKTMSASRCE SGGSVSASGQ STSTDTIVTR SCIKVHKMET ALGRSVDLSK  540
FNGYRELIDE LDKMFEFHGG LVDSSKGWKV IYTDAEGDIR IVGDFSWSDF LLSARKIYIY  600
PEEEVEKLQS SSA*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.41e-168ARF family protein