PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.1066

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 651aa MW: 69722.1 Da PI: 8.048

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.1066	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.9	2.9e-16	412	458	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq evm.model.AsparagusV1_07.1066 412 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 458 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence
MPLPEFHRAA TKKLESSQSN IFTCTSDVPS FMPDNEFVEL LWENGQIVMQ GQSHRPKKSS 60 YPTPFPSSNL RAQDKYGKYP TIPKFGQFEG IDSTINELSP AVPCANIGLN AQDDMTPWIN 120 YPIEDPLCSE FFSELVGISS NPPTIERSNG CAAKDLHNAE NGHSSRALRD GSDPSKIRGN 180 NLPQQCQGSV GNLKSRVTGF GAGGSGTSST HHGHFQKPDL VSVSKPLAAG NGVGLMNFSQ 240 FSRPPSLVRA NNKSVDRLKT NEKVSSATAS TNPMESTLIE SSGLRGNSGL NSHKVEVRSN 300 EKGKEDVVLA EQRTEAICNN KNNQSSSFAA SVTVGRNEAE KGPEAVVASS VCSGNSAGAE 360 SNDPKHTAKR KNREGDESGY HSEDPDDDST GLKKPSAGRG RTGTKRSRAA EVHNLSERRR 420 RDRINEKMRA LQELIPNCNK VDKASMLDEA IEYLKTLQLQ VQMMSMGSGL CMPPMMLPPG 480 MQHIRAPTMT HFSPMGVGMG MGMGLSYGMG MLDMNSSPNC PLIPVPSMHT SQFPCTSVGI 540 PGSAGLQLFG IPGHGQGLPV PLPRAPLFNP LSVPRAKGNS VNEVPGMIAN PLQVSDSGPS 600 SMCKDQAQRE TSKSESQANL VQISNQASHV TENATKNTIN ENGNASSRHN *

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence

MPLPEFHRAA TKKLESSQSN IFTCTSDVPS FMPDNEFVEL LWENGQIVMQ GQSHRPKKSS  60
YPTPFPSSNL RAQDKYGKYP TIPKFGQFEG IDSTINELSP AVPCANIGLN AQDDMTPWIN  120
YPIEDPLCSE FFSELVGISS NPPTIERSNG CAAKDLHNAE NGHSSRALRD GSDPSKIRGN  180
NLPQQCQGSV GNLKSRVTGF GAGGSGTSST HHGHFQKPDL VSVSKPLAAG NGVGLMNFSQ  240
FSRPPSLVRA NNKSVDRLKT NEKVSSATAS TNPMESTLIE SSGLRGNSGL NSHKVEVRSN  300
EKGKEDVVLA EQRTEAICNN KNNQSSSFAA SVTVGRNEAE KGPEAVVASS VCSGNSAGAE  360
SNDPKHTAKR KNREGDESGY HSEDPDDDST GLKKPSAGRG RTGTKRSRAA EVHNLSERRR  420
RDRINEKMRA LQELIPNCNK VDKASMLDEA IEYLKTLQLQ VQMMSMGSGL CMPPMMLPPG  480
MQHIRAPTMT HFSPMGVGMG MGMGLSYGMG MLDMNSSPNC PLIPVPSMHT SQFPCTSVGI  540
PGSAGLQLFG IPGHGQGLPV PLPRAPLFNP LSVPRAKGNS VNEVPGMIAN PLQVSDSGPS  600
SMCKDQAQRE TSKSESQANL VQISNQASHV TENATKNTIN ENGNASSRHN *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	417	422	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	4e-54	bHLH family protein