PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.1061

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 348aa MW: 39024.3 Da PI: 6.5955

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.1061	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl evm.model.AsparagusV1_07.1061 14 KGLWSPEEDEKLLNHIHKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	51.6	2.1e-16	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg +++eE++l++++++ lG++ W+ Ia+ ++ gRt++++k++w+ evm.model.AsparagusV1_07.1061 67 RGTFSQEEEDLIIELHATLGNR-WSQIAAQLP-GRTDNEIKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLLNHIH KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQEEEDLIIE LHATLGNRWS QIAAQLPGRT DNEIKNFWNS SIKKRLKQRG 120 IDHNTHKPII SESEEDKATT ISNVTCDYDE LNIFSPNSGT PAAYDVLQPH FPFDSRNSSL 180 LSRELFINQT LSTNHENSSS WQLPNNPTGF SFPFSQLSYP ESANPILGMN SEFNCNTIST 240 VIPSASRSFP STMNNLKPAI YENTAIDTSQ FWGSASVNSS KFAGERGAGI DFKRNDSIFE 300 GNSFSVSDIM QDKGTQEPAD SKWSEYLDGS CPVSAALQNQ TEPLYGF*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLLNHIH KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEEDLIIE LHATLGNRWS QIAAQLPGRT DNEIKNFWNS SIKKRLKQRG  120
IDHNTHKPII SESEEDKATT ISNVTCDYDE LNIFSPNSGT PAAYDVLQPH FPFDSRNSSL  180
LSRELFINQT LSTNHENSSS WQLPNNPTGF SFPFSQLSYP ESANPILGMN SEFNCNTIST  240
VIPSASRSFP STMNNLKPAI YENTAIDTSQ FWGSASVNSS KFAGERGAGI DFKRNDSIFE  300
GNSFSVSDIM QDKGTQEPAD SKWSEYLDGS CPVSAALQNQ TEPLYGF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-84	MYB family protein