PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_06.704 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 20647.6 Da PI: 9.1457 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 86.9 | 2.7e-27 | 4 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFG..asnvlkllkalpeeeredamsslvyeAearardPvy 74 +C++C++lr++C+++C ++p++ p+eq++++ +++k++G ++ +++l++++pe+ r+++++sl+yeA+ r+ +P++ evm.model.AsparagusV1_06.704 4 SCNGCRILRKGCSESCSIRPCLrwlrnPEEQANATLFLAKFYGygRAGLMSLITSAPEQLRPAIFRSLMYEACGRIVNPIQ 84 6****************************************86226789******************************** PP DUF260 75 Gavgvilklqqqleqlkaelallke 99 G+vg++++++++++++++e +l ++ evm.model.AsparagusV1_06.704 85 GSVGLLSSGNWHVCEAAVESVLKGS 109 *****************99988765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence |
MRMSCNGCRI LRKGCSESCS IRPCLRWLRN PEEQANATLF LAKFYGYGRA GLMSLITSAP 60 EQLRPAIFRS LMYEACGRIV NPIQGSVGLL SSGNWHVCEA AVESVLKGSP ITTNPNFRTY 120 DIRHVPREPG PPAGPSKVVK NRARFRRSVS QTGSGSGLGS VELEGSNVTE AEDEVRLDLE 180 LGLGPPGARA G* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 1e-64 | LBD family protein |