PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_06.425
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family ARR-B
Protein Properties Length: 378aa    MW: 43565.4 Da    PI: 5.5287
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_06.425genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like58.41.6e-18183235155
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   k+r+ Wt++L e+F +a++ L G++ A+P++i ++++vkg+ ++hv+SHLQkYR+
  evm.model.AsparagusV1_06.425 183 KKRVIWTSDLEEKFQDAIRLL-GID-AIPSKITKFINVKGVNRDHVASHLQKYRI 235
                                   68*******************.888.****************************7 PP
2Myb_DNA-binding26.51.5e-08187234348
                                   SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGgg.tWktIartmg.kgRtlkqcksrwqkyl 48 
                                    WT +++e++ da+++lG +  +++I + ++ kg  + ++ s++qky+
  evm.model.AsparagusV1_06.425 187 IWTSDLEEKFQDAIRLLGIDaIPSKITKFINvKGVNRDHVASHLQKYR 234
                                   5**********************************************7 PP
3Response_reg60.31e-20151231109
                                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEES CS
                  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvta 79 
                                   v+i+d++p++++ ++++l +++y +v+++ d+  al ll+ek   +Dl++    mp+m+G+ ll++ ++e  ++p+i++++
  evm.model.AsparagusV1_06.425  15 VMIIDKDPIFLKTIQEILLSSHY-KVTTCFDPNVALSLLQEKAeeFDLVVAESHMPEMSGFVLLRTVKTEF-NIPVILMSD 93 
                                   89*********************.***************999889************************99.********* PP

                                   TTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                  Response_reg  80 hgeeedalealkaGakdflsKpfdpeelvk 109
                                   + +    ++a++ Ga  fl+Kp +++ + +
  evm.model.AsparagusV1_06.425  94 NLQRIISTKAIEQGACYFLEKPLKINVIKN 123
                                   ***********************9988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MEDCMLDFFP NGLHVMIIDK DPIFLKTIQE ILLSSHYKVT TCFDPNVALS LLQEKAEEFD  60
LVVAESHMPE MSGFVLLRTV KTEFNIPVIL MSDNLQRIIS TKAIEQGACY FLEKPLKINV  120
IKNIWKYVTL KDVSNKGDIT MSNQQGRKRK TSRTSDHEHE RPKKRKHNQV EEKEDNNYSR  180
LKKKRVIWTS DLEEKFQDAI RLLGIDAIPS KITKFINVKG VNRDHVASHL QKYRIRKMKQ  240
EAKNLAPFLE QLNSSANPSS STFQLQEQQQ QQQQSKDNQL YRTNPWLALM LELEQSDSDP  300
DESDNNPVFD MAYVRECLTR RGIKCNTEIP NDNLSSENIG QAVDKYTVSK ETDEFDDLGE  360
MIKELFADDD DPPAGFV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147166RKRKTSRTSDHEHERPKKRK
2148167RKRKTSRTSDHEHERPKKRK
3163182RKRKTSRTSDHEHERPKKRK
4164183RKRKTSRTSDHEHERPKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-48ARR-B family protein