PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_06.33 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | LSD | ||||||||
Protein Properties | Length: 171aa MW: 18089.1 Da PI: 8.5511 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.2 | 2.4e-12 | 7 | 29 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C gCr++L YPrGA++V+Ca+C evm.model.AsparagusV1_06.33 7 CDGCRNVLLYPRGATNVCCAICS 29 **********************7 PP | |||||||
2 | zf-LSD1 | 38.5 | 1.9e-12 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+CrtlL+ ++GA+sVRC++C tV evm.model.AsparagusV1_06.33 46 CGNCRTLLMHTPGATSVRCSCCSTV 70 ***********************99 PP | |||||||
3 | zf-LSD1 | 42 | 1.6e-13 | 84 | 107 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C +Crt+L YP+GApsV+Ca+C+ evm.model.AsparagusV1_06.33 84 CAQCRTTLVYPYGAPSVKCAICHY 107 **********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence |
MQSQLVCDGC RNVLLYPRGA TNVCCAICSM ITPVPLPGME MAQLICGNCR TLLMHTPGAT 60 SVRCSCCSTV NLPRSVDRVA NVSCAQCRTT LVYPYGAPSV KCAICHYITN VGMGSMRVPI 120 PFNRPNEAAV NTPSTSSSNS QTVVVENPMS RDARGKLVSN VVVGVTTDKK * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 2e-58 | LSD family protein |