PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_06.235
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 473aa    MW: 54438.3 Da    PI: 8.8049
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_06.235genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.6e-08831126
                                  --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                                  +kt+lC+ ++r G C++ ++C+FaHg
  evm.model.AsparagusV1_06.235  8 FKTKLCMLYQR-GRCSR-PNCNFAHG 31
                                  69*********.*****.*******9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    
MLGPRKLFKT KLCMLYQRGR CSRPNCNFAH GDAELRRFSA RSSSFNGRRD YRAGDLRGKL  60
DRRYSPDRRH SPVRDARSHR AFHVQRPLSR DRGNSFSRSP IRRSEREYRR KQHVDGESDR  120
SESLKASDGA ENPKKQDKVS TYDKNCDFEE QLKQVQSDIV RLEEHKSQLK NFLEEKIVEE  180
HKLSGRIEDL EIQLNKEQED CKRITSRIKQ FVRAYGRYLK AQEELTRSQT RLQRLGDQLG  240
SDISKSGANE EDLSVNIPSD EDPNWDNRRS PRNGSNEETK RDALSVKKRP YILSATSGET  300
RVGNSQKRGR LSGSVSRSEK IIGSEGPGHL SENYNKEKES KKMIEKNKEV NKSISDDYKR  360
VKNHKSGNVT LDKIAVKGSE VRRIRPSTSI AANAVDELFE ANEMEDRSEA MEVTAVYDDN  420
KTDTSYMPLP PPPPRIDLNA YKQYEDDDED VDVEKVESEM LDFDLNGEVE IE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.13e-50C3H family protein