PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_06.1989
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MIKC_MADS
Protein Properties Length: 497aa    MW: 55759 Da    PI: 7.1131
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_06.1989genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.73.6e-1953871751
                                   HHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                         SRF-TF 17 rngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                   ++g+lKKA+E+SvLCdaeva+i+fs++gklyeys+
  evm.model.AsparagusV1_06.1989 53 QAGLLKKAHEISVLCDAEVALIVFSTKGKLYEYST 87
                                   58*******************************96 PP
2K-box981.4e-32831661598
                          K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                                     +++++++kLk +ie+Lqr+qRhl+GedL++LslkeL qLeqqLe+slk+iR++K++++l++i elq+kek+l+++nkaL
  evm.model.AsparagusV1_06.1989  83 YEYSTDSSKLKGKIESLQRSQRHLMGEDLDPLSLKELGQLEQQLETSLKNIRTRKSQVMLDSIAELQEKEKSLRDQNKAL 162
                                    578999************************************************************************** PP

                          K-box  95 rkkl 98 
                                    +k++
  evm.model.AsparagusV1_06.1989 163 EKEF 166
                                    *987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    
MGTRNAISKT TPVSPKTARD DYIVPVREIA GVSERRWGGG AAEEDRGTRS AGQAGLLKKA  60
HEISVLCDAE VALIVFSTKG KLYEYSTDSS KLKGKIESLQ RSQRHLMGED LDPLSLKELG  120
QLEQQLETSL KNIRTRKSQV MLDSIAELQE KEKSLRDQNK ALEKEFLEKS KAKAQAQQAH  180
WEQQQNQQQT SSSSPSSFLI PENLPTLNMG TYQARNNEED EEAAHPQVRL GSSLLPPWMV  240
RHLNGDTAVR KVIPLSMPSP QIATHNVTLL ERYAFHRYIT PMTKKHVQID ISSDTVCPWC  300
FVGKKNLEKA IDISKDQFDF EVRWHPFFLE PSAPKEGIKK LEFYYKKFGA GQFDRMALRM  360
TEIFRSLGFE YDTSGLTGST LDSHRLITFA AKQGYDKQNA LVDELFLNYF CQGKYIGDRQ  420
VLLDAAEKAG VEGAAEFLED PNRGLKEVNE EFEKYSSRIS GVPYFVINGK HGLSGGQPPE  480
VFLRAFQAVA NDTNAA*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-31MIKC_MADS family protein