PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_06.1911 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB_related | ||||||||
Protein Properties | Length: 301aa MW: 32585 Da PI: 9.784 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.7 | 1.1e-12 | 5 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 ++rWT+eE+ l +++++G+g W+tI + R+ ++k++w++ + evm.model.AsparagusV1_06.1911 5 KQRWTAEEESALRAGIAKHGTGKWSTILKDPEfgqilYSRSNVDLKDKWRNIR 57 79****************************9999****************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence |
MGNPKQRWTA EEESALRAGI AKHGTGKWST ILKDPEFGQI LYSRSNVDLK DKWRNIRVIS 60 SGRGPRERAT VTMKKNRQTP KSNNTQMVPS SVVRDISDGI LDAMPIAISA GPPPTTTPGK 120 TEANMANLIL EAITNLKEAN GCNITAITMY IEDHYVPRAD LKQLLSGELQ RMTGTGILIK 180 SKHNYRIAPN SNPSEGRSSK SKLLCKGRQR EPSRVNTGAD IKHLNKPQTY SNLAKMVHMS 240 SEEAAAAAVQ AIAEAEAATY KAEEAMRLAE AAEADAEYAQ AVAEQLALAL ENGSSAMSVR 300 * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.1 | 5e-55 | MYB_related family protein |