PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_06.1823

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 1158aa MW: 129474 Da PI: 7.8479

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_06.1823	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.6	0.00025	31	58	12	32
HHHHHHHHHHHHHCTSCC.C........ CS HLH 12 RRdriNsafeeLrellPk.as......k 32 RR+r+N+ +++L++ lP +s + evm.model.AsparagusV1_06.1823 31 RRRRMNDELQRLKDALPRiQSvvnaaeS 58 9****************97766655551 PP

Sequence ? help Back to Top
Protein Sequence Length: 1158 aa Download sequence
MVVVGDVIAS KIIEKLVEVG FDYAADQFFA RRRRMNDELQ RLKDALPRIQ SVVNAAESGQ 60 GEITGDDLDE WLWQLKDAVY MASDVLDDLD YTDIQKRAEA DAAGSGPRGS KVSGFISDSK 120 RRVSKFSKRA FKSDPTLEKL RGAVKRLSEV AAGVEVFNSL VTERNQQQQQ QQQQEQLRET 180 GPIVRERDVL GRDGDRKEVL QWLTRAPIAN EDHEGISLFS IEGLGGVGKT TLAQVVYRDD 240 TVQSSFSIKI WVCVSTRFDV KKITGDILEC AAQRRPDVGG LGPLQEALEA LVSSKKFLLV 300 LDDVWNDDDL SSWQTLFAPM RCGLKGSKII LTARSKKVSE MATLALGGTS KIILTARSKK 360 VSEMATLALG GTTNESKKLN PLDKSDFLSL FNRYAFAGTN PHNHGKLQSI GEQIAGRLGG 420 LPLAAKTIGA LLRSNLDDSH WTNILQSSRI SDHGPQRDGV MPALMLSYYY LPKHLRPCFA 480 FLSTFPQDHR FLKGDLVLIW MALGFIQQSP QNPAQTPEDI GSRYVDELAK LSFLEQLGLH 540 NTNPSTQGRE EEYSMHDLLH DLSSKVSHGE CFTFVGNMSI NQIPNTVRHL YFETGDLGLL 600 KDMDKWKNLH TLILKFNGYN DEHAVAFRQV FESLESIRVL RITIKEMEVL PCAIDKLRHL 660 RYLSVDHRFT RLPSSICKLY HLQVLACRNI ATSSVLVLNN LINLRHLLPC HIPHGNVDGI 720 GTLTSLQGLS FSAGAYKLSE LKDLRELQEL RISGLRNQRD GEEVSLVQLR DKKRLRVLRL 780 EWDDDSDAAE EYEKVLDCLH PPDSLKELEI ARSMKRDSKC YVWNGMMIVM QQRSMKRCSI 840 ASIRLIASRN SKLHAWKHLP SLGKLPYLNE LRLDSLTGLV QIGFEGGFQQ LKILQIWDCE 900 QLEEWSGFGA ETAPCWPLFE YLEISRCPKL KALPPLPLSL QSLELKRVGL SDSPTFFPAT 960 PSSSSSSPSL THMKIAGCKN LTSVAGLLRH RLSALMMLKI SCCEALADLH AEEGFQHLHS 1020 IESLAIEYCP KLKMATDAVA LTSLSRLTLS GWNHITSFPS EEACRRLTSL KVLRLGDMGG 1080 LMSVEGLKAL SHLAWLSIRK CPKLVQAAAA SIKGKEEEEE FTLTVSTLNV DDPLLLHVEP 1140 LRKRTSVTDL CKDKRFA*

Sequence ? help Back to Top

Protein Sequence Length: 1158 aa Download sequence

MVVVGDVIAS KIIEKLVEVG FDYAADQFFA RRRRMNDELQ RLKDALPRIQ SVVNAAESGQ  60
GEITGDDLDE WLWQLKDAVY MASDVLDDLD YTDIQKRAEA DAAGSGPRGS KVSGFISDSK  120
RRVSKFSKRA FKSDPTLEKL RGAVKRLSEV AAGVEVFNSL VTERNQQQQQ QQQQEQLRET  180
GPIVRERDVL GRDGDRKEVL QWLTRAPIAN EDHEGISLFS IEGLGGVGKT TLAQVVYRDD  240
TVQSSFSIKI WVCVSTRFDV KKITGDILEC AAQRRPDVGG LGPLQEALEA LVSSKKFLLV  300
LDDVWNDDDL SSWQTLFAPM RCGLKGSKII LTARSKKVSE MATLALGGTS KIILTARSKK  360
VSEMATLALG GTTNESKKLN PLDKSDFLSL FNRYAFAGTN PHNHGKLQSI GEQIAGRLGG  420
LPLAAKTIGA LLRSNLDDSH WTNILQSSRI SDHGPQRDGV MPALMLSYYY LPKHLRPCFA  480
FLSTFPQDHR FLKGDLVLIW MALGFIQQSP QNPAQTPEDI GSRYVDELAK LSFLEQLGLH  540
NTNPSTQGRE EEYSMHDLLH DLSSKVSHGE CFTFVGNMSI NQIPNTVRHL YFETGDLGLL  600
KDMDKWKNLH TLILKFNGYN DEHAVAFRQV FESLESIRVL RITIKEMEVL PCAIDKLRHL  660
RYLSVDHRFT RLPSSICKLY HLQVLACRNI ATSSVLVLNN LINLRHLLPC HIPHGNVDGI  720
GTLTSLQGLS FSAGAYKLSE LKDLRELQEL RISGLRNQRD GEEVSLVQLR DKKRLRVLRL  780
EWDDDSDAAE EYEKVLDCLH PPDSLKELEI ARSMKRDSKC YVWNGMMIVM QQRSMKRCSI  840
ASIRLIASRN SKLHAWKHLP SLGKLPYLNE LRLDSLTGLV QIGFEGGFQQ LKILQIWDCE  900
QLEEWSGFGA ETAPCWPLFE YLEISRCPKL KALPPLPLSL QSLELKRVGL SDSPTFFPAT  960
PSSSSSSPSL THMKIAGCKN LTSVAGLLRH RLSALMMLKI SCCEALADLH AEEGFQHLHS  1020
IESLAIEYCP KLKMATDAVA LTSLSRLTLS GWNHITSFPS EEACRRLTSL KVLRLGDMGG  1080
LMSVEGLKAL SHLAWLSIRK CPKLVQAAAA SIKGKEEEEE FTLTVSTLNV DDPLLLHVEP  1140
LRKRTSVTDL CKDKRFA*