PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_06.1754
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family bHLH
Protein Properties Length: 178aa    MW: 19902.1 Da    PI: 10.4041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_06.1754genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.23.1e-0893133954
                                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                            HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     r RR+ri +++  L++l+P        K++ a++L +Av+Y+k L
  evm.model.AsparagusV1_06.1754  93 ARLRRERISERIRILQRLVPGG-----VKMDTASMLDEAVQYMKFL 133
                                    699*****************96.....6****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MVQDFVSSVT AEPLMNWFSS ITQIENEAQI SQPPQLPPTC NPFQGFKPNT VEEMREMIFI  60
MAALQPVNID PESVKPPKRR NVRISKDPQS VAARLRRERI SERIRILQRL VPGGVKMDTA  120
SMLDEAVQYM KFLKERVTAM QRAGAGRSMT GLISSASYSG SFNKVEQGFI KPTQLLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19499RLRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-33bHLH family protein