PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_06.1604 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | TCP | ||||||||
Protein Properties | Length: 331aa MW: 37255.3 Da PI: 6.5275 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123 | 3.4e-38 | 104 | 229 | 3 | 132 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssa 82 ++drhskihT++g+RdRR+Rls+e+a++fF Lqd LGfdk+s t++WL++ + ai + +s+ ++ ++ evm.model.AsparagusV1_06.1604 104 LRTDRHSKIHTAQGLRDRRMRLSLEVARKFFSLQDLLGFDKASATVDWLITHSRSAIEQHLIHLASAT-NV------DAQ 176 589******************************************************98887733333.22......222 PP TCP 83 snsssg...kaaksaakskksqksaasalnlakesrakarararertrekmri 132 +++ ++ k++ s++k+ ++k+ +s + l +esra+arararertrek+r+ evm.model.AsparagusV1_06.1604 177 DAPVIAysgKKSDSTKKHPLKEKDVSSRSVLTRESRAEARARARERTREKKRM 229 22222233366777778888899999999*********************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence |
MLPYRDPSYL LLDTPFGLKN NDGFPALSSP QLKPPSPAHF LYYDENLMSH ADLFTDNFTP 60 LQLERDQEAN TSKKTTETDT STEPISRKKK GVQAAGEGGK QRSLRTDRHS KIHTAQGLRD 120 RRMRLSLEVA RKFFSLQDLL GFDKASATVD WLITHSRSAI EQHLIHLASA TNVDAQDAPV 180 IAYSGKKSDS TKKHPLKEKD VSSRSVLTRE SRAEARARAR ERTREKKRML VDVDNGDGGN 240 FNSSEDLIYN SIEKDEWPAG EVPQTPDCLQ MAMDGESDKL ANGSYYQYSK DYSMVTKNEE 300 RVNFFNEQLN DGNFSGEFEV YSYNPARPAA * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 8e-23 | TCP family protein |