PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_06.1536
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 1045aa    MW: 114771 Da    PI: 5.8626
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_06.1536genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.24e-184086148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g WT+eEd +l +av+++ g++Wk+Ia++++  Rt+ qc +rwqk+l
  evm.model.AsparagusV1_06.1536 40 KGQWTAEEDAILCRAVQRFKGKNWKKIAECFP-DRTDVQCLHRWQKVL 86
                                   799*****************************.************986 PP
2Myb_DNA-binding60.24.5e-1992138148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                    +g+W++eEd+++v+ v+++G++ W++Ia+ ++ gR +kqc++rw+++l
  evm.model.AsparagusV1_06.1536  92 KGPWSKEEDDIIVEMVNKHGPKKWSAIAQALP-GRIGKQCRERWHNHL 138
                                    79******************************.*************97 PP
3Myb_DNA-binding46.11.1e-14144186145
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                    + +WT+eE+  l++a++ +G++ W+   + ++ gRt++ +k++w+
  evm.model.AsparagusV1_06.1536 144 KEAWTQEEEIALIHAHQVYGNK-WAELTKFLP-GRTDNAIKNHWN 186
                                    579*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1045 aa     Download sequence    
MGVAEAAAIS SATKDGGGEE FQRQRPLRGR ISGPTRRSTK GQWTAEEDAI LCRAVQRFKG  60
KNWKKIAECF PDRTDVQCLH RWQKVLNPEL VKGPWSKEED DIIVEMVNKH GPKKWSAIAQ  120
ALPGRIGKQC RERWHNHLNP AINKEAWTQE EEIALIHAHQ VYGNKWAELT KFLPGRTDNA  180
IKNHWNSSVK KKLDSYRASG LLAQFQGVHS VNVPNHVTSL SATSLHQNEE SGFRDKPEFD  240
VSSECSQNSA LALSSQSDCE LAANLIPKQE KFKPEEDSAK RRAVDAEGHC ARECYASVRD  300
VAYVSEVQHS RGLISLSASE QNSLCEDGAS ESISYPSVSD GMMSYSFTEI SQKAQGSKET  360
SEHNPNHANG NHGRKPKLFQ NDIRQNSTYT SSVLASKQKN LLMSETDFST SMVFVGEMSS  420
NFPFGAPFSS SSVANLNSFQ GIPNCQSEDY ISGTCMNPAS TSQTLSPVIQ SSAAEIPYTQ  480
SLTGEVSPSF MCKNNGKLLD RSDKVGITEA SLVISDSDVT KCLHDGFEHS SSSQIPSVVG  540
DRSMICLPAD FNQEKETSKK TFMEMIGFGP VDAIGNLSLS GENGNEQTNC PESGGLFYEP  600
PRIPTFDPFV SCDLIPSSEQ QEFSPLGIRQ IMMSSTTYSL WDSPSHDDSP DAFLKNAAKN  660
FLCTPSIMKK RQRDLLSPLQ EERTDKKSGR YMKHGFMSKC STSKDISCID AMDENIANEI  720
PSCSAEKFLA STSYNQEKDS GASTQLVENM DPSMQEPGSP GEGTDASNLQ EKMEVSTTRN  780
KATGILTEHN TNDLLQFSPN QYKCRRLGAD DVSSENLSPR LLSMSKKDYK NAHSESLSDM  840
LWSPNIRECK KACHSIPIAS THCATSSHSS HVSAEKFSSS GMECENLNIF ADTPSVKRGI  900
ESPSAWKSPW FMSSLLPGHG IEADIVYEDY YLSPSDRSYD AIGLMRQLNE QSAAAVAEAR  960
EILASGKPDP DFEKRCAGSE KLLKRLQSGK RTMDDIVPQP PNSMVEGRVL DFSGCATPAK  1020
RTDNSKLCGI GVSGTFESSD LFSL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-107MYB family protein