PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.522

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

NF-X1

Protein Properties

Length: 581aa MW: 65748.9 Da PI: 8.5673

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.522	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	20.3	1.2e-06	4	23	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H+C++ CHeG+C++Cp+ evm.model.AsparagusV1_05.522 4 CGRHRCERGCHEGECGECPL 23 ******************95 PP
2	zf-NF-X1	20.1	1.4e-06	132	157	1	20
zf-NF-X1 1 CG......kHkCqklCHeGpCppCpq 20 CG +HkC ++CH+G+C pCp+ evm.model.AsparagusV1_05.522 132 CGrklrcnNHKCPSPCHRGDCAPCPL 157 666666669***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MLRCGRHRCE RGCHEGECGE CPLTGRRTCP CGKKEYKGVA CDVEVPNCGS TCEKMLACGR 60 HRCPERCHRG VCVETCRTVV MKGCRCGSLR KEVPCYQDLV CERKCQGTRD CGRHACRRRC 120 CGGDCPSCPE ICGRKLRCNN HKCPSPCHRG DCAPCPLMVS ISCSCGETHF EVPCGVERSQ 180 KPPRCPKQCH ISRLCRHKSE CRPHKCHYGA CPPCKLICGE GLPCGHTCKQ RCHGPIPPPN 240 PEFTLRPKKK QRDRHIESTP GSPCPPCQEV ILIPCRGQHI GEERPMICSR TVQFSCQNLC 300 GYLLLCGNHY CTKACHFLEL TEHEGQEERC EDCFLPCQKV REPPCPHPCP LPCHSNDCPP 360 CKTLIKRTCH CGSMVHVFEC IYYNSLSDKE QQRVRCCVGT CHRKLPKCPH LCSETCHPGE 420 CPSSNQCTKK VTVRCGCNNL KKDWICQDAI NAYKKAGRDP KDITKTQFGV GLLACNEDCR 480 SKIKVVDSEP QLRKAKVTQS VVVDAEKVPK RRKRREKVRD IRNASKFQAI KQTVWRYFLL 540 LLICLVISAI AYYGYKGIFL LSDWMNKIEE KQQRRRYPRV *

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MLRCGRHRCE RGCHEGECGE CPLTGRRTCP CGKKEYKGVA CDVEVPNCGS TCEKMLACGR  60
HRCPERCHRG VCVETCRTVV MKGCRCGSLR KEVPCYQDLV CERKCQGTRD CGRHACRRRC  120
CGGDCPSCPE ICGRKLRCNN HKCPSPCHRG DCAPCPLMVS ISCSCGETHF EVPCGVERSQ  180
KPPRCPKQCH ISRLCRHKSE CRPHKCHYGA CPPCKLICGE GLPCGHTCKQ RCHGPIPPPN  240
PEFTLRPKKK QRDRHIESTP GSPCPPCQEV ILIPCRGQHI GEERPMICSR TVQFSCQNLC  300
GYLLLCGNHY CTKACHFLEL TEHEGQEERC EDCFLPCQKV REPPCPHPCP LPCHSNDCPP  360
CKTLIKRTCH CGSMVHVFEC IYYNSLSDKE QQRVRCCVGT CHRKLPKCPH LCSETCHPGE  420
CPSSNQCTKK VTVRCGCNNL KKDWICQDAI NAYKKAGRDP KDITKTQFGV GLLACNEDCR  480
SKIKVVDSEP QLRKAKVTQS VVVDAEKVPK RRKRREKVRD IRNASKFQAI KQTVWRYFLL  540
LLICLVISAI AYYGYKGIFL LSDWMNKIEE KQQRRRYPRV *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	246	252	RPKKKQR
2	507	513	KVPKRRK
3	509	515	PKRRKRR
4	511	517	RRKRREK
5	512	518	RRKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein