PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_05.418 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | LBD | ||||||||
Protein Properties | Length: 212aa MW: 23035.3 Da PI: 9.7554 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.8 | 1.4e-41 | 42 | 141 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++p +r da++slvyeA++r+rdP+yG++g il evm.model.AsparagusV1_05.418 42 PCAACKLLRRRCAQECIFAPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPGPQRADAANSLVYEANVRLRDPIYGCMGAIL 122 7******************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lqqql++l++ela++++e evm.model.AsparagusV1_05.418 123 ALQQQLHSLEVELAAVRAE 141 **************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MSTTRFEEVS KKIKREADVV ASDRMSRRNL LGPVGTLNTV TPCAACKLLR RRCAQECIFA 60 PYFSPHEPQK FAAVHKVFGA SNVSKMLMEV PGPQRADAAN SLVYEANVRL RDPIYGCMGA 120 ILALQQQLHS LEVELAAVRA ETLKHKFRQN SASINIPSSL IAPNSSEASA AARPLPPPQA 180 ASSSSSMYTP LSNSRDYSSI SNEHVAFFGQ R* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 5e-74 | LBD family protein |