PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_05.3567 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | Trihelix | ||||||||
Protein Properties | Length: 254aa MW: 28141.8 Da PI: 5.0033 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 29.7 | 1.7e-09 | 2 | 40 | 34 | 72 |
trihelix 34 vskkmrergferspkqCkekwenlnkrykkikegekkrt 72 +s+++ + +++rs+ qCk++we+l +ykki+ +e + + evm.model.AsparagusV1_05.3567 2 ISDNCVSMKVNRSSSQCKKRWESLLSDYKKITIWEASIS 40 8999******************************99863 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence |
MISDNCVSMK VNRSSSQCKK RWESLLSDYK KITIWEASIS ASAYGPYWSL KPGRRRQLRL 60 PYSFDQQVFC SVDAVIKAQE ARIASSATDT DSEDLIGLHE EDKSSGGSQG MVEAEASDPD 120 YIISMPEAKC QAKEVISRLE AEMAEADADL GPEKTGTDTT KNTNKEHEIT NKLKENAKEI 180 HAILRGELPD NVNRGCGLVE LTKRNAAETE FTRRQADELI KAFGVLARTL NQFKELIKDG 240 ECKEISLMSP MAL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 60 | GRRRQLRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 1e-18 | Trihelix family protein |