PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.3179

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

TALE

Protein Properties

Length: 593aa MW: 65650.4 Da PI: 6.6811

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.3179	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.9	4e-09	518	552	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ evm.model.AsparagusV1_05.3179 518 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 552 569*****************************885 PP
2	ELK	40.3	6.6e-14	472	493	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ evm.model.AsparagusV1_05.3179 472 ELKGQLLRKYSGYLGSLKQEFM 493 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence
MSSREDKKKK AMTGSSSGRG GIRTLADLNR RPDAGSDSDS DGPQEYYTGG EKSGMLVQDP 60 TKGGNNVDAL FDRARQMGAM QGPFEPHTSS SSRSFTGTGR LLSGETVPAA PQPPDNVIHN 120 IYFWRNGFTV GDGPLRRFDD PANESFLESI KKQECPKELE PEDRRSTVHV NLIRREENCP 180 EPVRHLSPFQ GVGRTLGGES SFTEPINQEP DTVAAAAPVV ADDSRPTTSI QLRLADGSRT 240 VARFNTDHTV GDIRAFIDNH AASSGRAAPP SYTLNFRLNR IVSLRESTWE KTSTIKGGIS 300 HLLPPPPLLL PPPSTHQANN NGEDFDSSLI KAKIMSHPHY PKLLSAYINC QKVGAPPEVV 360 ARLEEACSSS LMIGRAASSS SSASVEGDPA LDQFMEAYCE MLTKYEQELS KPFKEAMLFL 420 SRIDAQFKSL SLSSSSTSSL NPVCGDMERN ASSDEDVDVC ENYVDPHAED RELKGQLLRK 480 YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL DWWNRHYKWP YPSESQKLAL AESTGLDQKQ 540 INNWFINQRK RHWKPSEEIQ TYVVMGDASH PHYFLDNGFG NAYQLDVPPA LL*

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence

MSSREDKKKK AMTGSSSGRG GIRTLADLNR RPDAGSDSDS DGPQEYYTGG EKSGMLVQDP  60
TKGGNNVDAL FDRARQMGAM QGPFEPHTSS SSRSFTGTGR LLSGETVPAA PQPPDNVIHN  120
IYFWRNGFTV GDGPLRRFDD PANESFLESI KKQECPKELE PEDRRSTVHV NLIRREENCP  180
EPVRHLSPFQ GVGRTLGGES SFTEPINQEP DTVAAAAPVV ADDSRPTTSI QLRLADGSRT  240
VARFNTDHTV GDIRAFIDNH AASSGRAAPP SYTLNFRLNR IVSLRESTWE KTSTIKGGIS  300
HLLPPPPLLL PPPSTHQANN NGEDFDSSLI KAKIMSHPHY PKLLSAYINC QKVGAPPEVV  360
ARLEEACSSS LMIGRAASSS SSASVEGDPA LDQFMEAYCE MLTKYEQELS KPFKEAMLFL  420
SRIDAQFKSL SLSSSSTSSL NPVCGDMERN ASSDEDVDVC ENYVDPHAED RELKGQLLRK  480
YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL DWWNRHYKWP YPSESQKLAL AESTGLDQKQ  540
INNWFINQRK RHWKPSEEIQ TYVVMGDASH PHYFLDNGFG NAYQLDVPPA LL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	488	497	LKQEFMKKRK
2	494	498	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-109	TALE family protein