PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.311
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family LBD
Protein Properties Length: 170aa    MW: 19043.9 Da    PI: 4.8668
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.311genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.95.4e-367104197
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                   +C aCk+lrrkC+++C++apyf  +q +++f +vhk+FGasnv+kll++lp  +r++a+ ++ +eA+ar++dPv+G++++i
  evm.model.AsparagusV1_05.311   7 SCGACKFLRRKCEENCIFAPYFNYDQaEANFSAVHKIFGASNVSKLLSKLPIYNRSAAAITISFEAQARIQDPVRGCLSHI 87 
                                   6***********************99779**************************************************** PP

                        DUF260  81 lklqqqleqlkaelall 97 
                                   l+lq q+++l++e+++l
  evm.model.AsparagusV1_05.311  88 LALQYQVACLQEEIESL 104
                                   *************9875 PP

Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MVGVGSSCGA CKFLRRKCEE NCIFAPYFNY DQAEANFSAV HKIFGASNVS KLLSKLPIYN  60
RSAAAITISF EAQARIQDPV RGCLSHILAL QYQVACLQEE IESLMVKMVP RSCSLGTVDE  120
FKPRMQEVEP GYKEVINRLE DCLLNANDEP NSWEELALYL NDLEKDLMH*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.14e-48LBD family protein