PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.3002

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 296aa MW: 31959.4 Da PI: 9.0416

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.3002	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.9e-06	129	171	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ RR++iN ++ L+el+P + +k a +L + +++++sLq evm.model.AsparagusV1_05.3002 129 DQARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 171 688******************9....888999999999999999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MGTCVSALAS FRLRSSRVIL TGGGCSPTFP SNASLVDRAA RFSVFAAAES PEVSNSGEIS 60 AAKMKAEPAD SVDRPIIDRS PRVAGNKRKE AEKSKVRSTL GLELGLGFPI FGYSKLKIIL 120 CVFAVLGADQ ARREKINARM KLLQELVPGC NKISGTALVL DEIINHVQSL QRQVEFLSMR 180 LAAVNPRIDF SGLDNTLSAE CGRLMAGGNS NGRPGVAIDQ SSAWLDGTIN QGKFQQQMWL 240 VDPQHPQQHQ QQLWDRDDAQ QSPVFVSNPN TVAIFPYGSS NPNPVSLPNQ LKTEL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-42	bHLH family protein