PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.2671

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 427aa MW: 47774.5 Da PI: 5.7418

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.2671	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.9	1.5e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l + +++G+g +W + +++ g++R++k+c++rw++yl evm.model.AsparagusV1_05.2671 14 RGPWSPEEDAALRSYLEKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	42.5	1.5e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ +++ G++ W+ Ia++++ gRt++++k++w++ evm.model.AsparagusV1_05.2671 69 GGFTEEEDNVIYTLFRNIGSR-WSVIASHLP-GRTDNDVKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDAALRSYLE KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDNVIY TLFRNIGSRW SVIASHLPGR TDNDVKNYWN TKLKKRLLTP 120 APAQQAPPPS AAAPPPFPSF SGDPFDNGFI SFGEESYRFL SELPPLPMPA ANVKTETDSS 180 AASSSVENWS ATGASTVHGD TFLSELGFDS YSELLSGYGE SKKRGLSLEE KREQILQIFY 240 DSQDFYLLKE LEKLGPKKGV ISQSVKDVVQ SLVDDDLVLK DKIGTSVYFW SLPSCAGNQL 300 RSAHSKLEAD LSNSRKRFAE LIEQRDSLKK GREESDEREA ALEELKIIEQ KHKKLKEELA 360 SYADNDPAAL EAMRNATDVA HSAANRWTDN IFTVQQWCSS NFPQAKEQLE HMYREVGITE 420 DLEYLA*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MGRAPCCDKA NVKRGPWSPE EDAALRSYLE KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNVIY TLFRNIGSRW SVIASHLPGR TDNDVKNYWN TKLKKRLLTP  120
APAQQAPPPS AAAPPPFPSF SGDPFDNGFI SFGEESYRFL SELPPLPMPA ANVKTETDSS  180
AASSSVENWS ATGASTVHGD TFLSELGFDS YSELLSGYGE SKKRGLSLEE KREQILQIFY  240
DSQDFYLLKE LEKLGPKKGV ISQSVKDVVQ SLVDDDLVLK DKIGTSVYFW SLPSCAGNQL  300
RSAHSKLEAD LSNSRKRFAE LIEQRDSLKK GREESDEREA ALEELKIIEQ KHKKLKEELA  360
SYADNDPAAL EAMRNATDVA HSAANRWTDN IFTVQQWCSS NFPQAKEQLE HMYREVGITE  420
DLEYLA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	4e-74	MYB family protein