PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.2619
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family LBD
Protein Properties Length: 190aa    MW: 20665.4 Da    PI: 7.8244
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.2619genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.45.8e-4412110199
                         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                    +CaaCk+lrrkC ++C++apyfp e+p+kf nvhk+FGasnv+k+l++l +++reda++sl+yeAear++dPvyG+vg i
  evm.model.AsparagusV1_05.2619  12 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFINVHKIFGASNVTKILNDLLPHQREDAVNSLAYEAEARIKDPVYGCVGAI 91 
                                    7******************************************************************************* PP

                         DUF260  81 lklqqqleqlkaelallke 99 
                                    + lq+++++l++el+++++
  evm.model.AsparagusV1_05.2619  92 SVLQREVQRLQKELEAANA 110
                                    **************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MASSSSTGSN SPCAACKFLR RKCMPGCIFA PYFPPEEPQK FINVHKIFGA SNVTKILNDL  60
LPHQREDAVN SLAYEAEARI KDPVYGCVGA ISVLQREVQR LQKELEAANA DLLRLACGDI  120
PSGFSLPMQI GPQSAPPYNY QPSLPPHSTL PIPYNPHSNN PNPDSNNNTS TPHNPLSDIN  180
RRRGGFDIP*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.23e-69LBD family protein