PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.251

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 546aa MW: 58408.9 Da PI: 6.2946

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.251	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.2	2.3e-16	372	418	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq evm.model.AsparagusV1_05.251 372 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 418 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MPLSEFHRAA SRNLHSTRSL MTADVSSSVP DDEFVELLWE NGQIVMQGQS SKPKTSSHPK 60 VEDWDHRDPT IQKLSHPEEF DSVASEASLA VPCSDIGSYA QDDDDDGVAP WITNPMEDPF 120 SSEFFSEFVG INPNPPSIER SDGHSSRALR EGSGLSKIGG NQSQGSVLNN AMSRMSGFGA 180 DDDHFRKQGS ASASKPSGAS NGVGVMNFAN FSRPASLARA NSESLHRLKT NEKVSLASAS 240 TNPTESTLIQ SSGARGNLAL DLQSKVNNHN YASLVANKGS ISSDHRIDHQ RSRFAASIPV 300 AEKGPEAAVA SSMCSGSSAG AASSDQKHGA KRKDREGEEL GYHSEDVDDD GSKKPVTGRG 360 GSSTKRTRAA EVHNLSERRR RDRINEKMRA LQELIPNCNK VDKASMLDEA IEYLKTLQLQ 420 VQMMSMGNGL CMPPMMLPSG MQHIGAHPMA HFLPMGAGMG MGMGMSYGMG MLDMNGSPNF 480 PVIPVPSMHA SQFSYSLIPG TSGFQMPGST GVQLFGIPGH GQGILPVQES NTEATMDQPR 540 TGREN*

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MPLSEFHRAA SRNLHSTRSL MTADVSSSVP DDEFVELLWE NGQIVMQGQS SKPKTSSHPK  60
VEDWDHRDPT IQKLSHPEEF DSVASEASLA VPCSDIGSYA QDDDDDGVAP WITNPMEDPF  120
SSEFFSEFVG INPNPPSIER SDGHSSRALR EGSGLSKIGG NQSQGSVLNN AMSRMSGFGA  180
DDDHFRKQGS ASASKPSGAS NGVGVMNFAN FSRPASLARA NSESLHRLKT NEKVSLASAS  240
TNPTESTLIQ SSGARGNLAL DLQSKVNNHN YASLVANKGS ISSDHRIDHQ RSRFAASIPV  300
AEKGPEAAVA SSMCSGSSAG AASSDQKHGA KRKDREGEEL GYHSEDVDDD GSKKPVTGRG  360
GSSTKRTRAA EVHNLSERRR RDRINEKMRA LQELIPNCNK VDKASMLDEA IEYLKTLQLQ  420
VQMMSMGNGL CMPPMMLPSG MQHIGAHPMA HFLPMGAGMG MGMGMSYGMG MLDMNGSPNF  480
PVIPVPSMHA SQFSYSLIPG TSGFQMPGST GVQLFGIPGH GQGILPVQES NTEATMDQPR  540
TGREN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	377	382	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	4e-48	bHLH family protein