PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.2412
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family bHLH
Protein Properties Length: 291aa    MW: 33218.6 Da    PI: 4.8416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.2412genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-105698855
                                   HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                            HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                    Er RR+ +N+++  Lr  lP+      +K +K+++++ A++YI +Lq
  evm.model.AsparagusV1_05.2412 56 KERERRQLVNDKLKALRLALPNF-----TKFDKSSVVKDAIDYILMLQ 98
                                   6*********************8.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MNNMEEDSFY LDIERFFEYE EPDSLQVFGD AIPSNESSSP EQNASSSSAL PRSLVKERER  60
RQLVNDKLKA LRLALPNFTK FDKSSVVKDA IDYILMLQEQ EKRMTAEILQ LEAQVLNEKN  120
NREGITKSSV LATRSLHENF SIQIMEIKMW QVGERTLGVN LICDKKRGNM IKVYELFESL  180
NVNVIMANVT SVSESLLNTF FIEANTMNST QLKEMMEGAI AELNSEGSLF NSAHYSVGLN  240
STIAQSLKEM FDEYNPFAKS FRMAKERFDN NESSNVNLRL IRKRNNDGRT *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.21e-33bHLH family protein