PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_05.2409 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 26910.4 Da PI: 4.773 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.6 | 2.2e-13 | 51 | 96 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +Er+RR+++N+++ Lr+++P+ +K++Ka+i + A++Y+++Lq evm.model.AsparagusV1_05.2409 51 NIVMERNRRRKLNDKLYALRSVVPNI-----TKMDKASIIKDAIDYVQELQ 96 5679*********************7.....7******************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence |
MDEMEAEYNN YWETKRFYEE LDSWGIDEAL SYYDSSSPDG TASSSSPAAK NIVMERNRRR 60 KLNDKLYALR SVVPNITKMD KASIIKDAID YVQELQEEER RLMTEVTELE SAKKEKSNVS 120 DITQADYLVV GERRKKRISR TSLLAPGSPG TPWLEVMELS VSEVGERTLV VSITCNKKNG 180 TLIKMCDLFE SLNLNTISAN ITSVSGSLLH TLLVEADNVD CIQLKEKIAT AIAGYHDKP* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 2e-64 | bHLH family protein |