PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_05.2397 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | bHLH | ||||||||
Protein Properties | Length: 207aa MW: 23626.9 Da PI: 10.6902 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.7 | 4.2e-13 | 132 | 177 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq evm.model.AsparagusV1_05.2397 132 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 177 689*********************7....688*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MSLKMFCRCF FGRIWGHEGD RRWIQKWERR VFRRHPPSTS PSRHPLASPW EESALLPDNS 60 NFSSPPPGLK RHREGPTETQ NGGEVRNGGL SHQFSFPKTS SEVAAMEKFL QFQDSVPCKI 120 RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT NTADMLDLAV DYIKELQKQV 180 KAISENRANC TCSSSSKQKP YTSPAV* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 3e-56 | bHLH family protein |