PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_05.2270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | CO-like | ||||||||
Protein Properties | Length: 243aa MW: 27158.4 Da PI: 4.8959 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27.8 | 5.1e-09 | 3 | 45 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ + + +++ +Ce + lC C e H H +v evm.model.AsparagusV1_05.2270 3 RDCDSCRSAPASVYCEADAASLCSACDAEVHAAnfishrHHRV 45 78****************************9557788555555 PP | |||||||
2 | CCT | 68 | 2.5e-23 | 172 | 215 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k RkFeK+irY+sRKa+Ae RpR+KGrF+k++ evm.model.AsparagusV1_05.2270 172 REARVLRYREKKKMRKFEKTIRYASRKAYAEARPRIKGRFAKRS 215 9*****************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MMRDCDSCRS APASVYCEAD AASLCSACDA EVHAANFISH RHHRVPVVGM EEYNEGEQSN 60 YAALFGEEVD EYLDLVEFGS CEEKKSGLSF ECVKSEVSEG VVPVQSLVVN EEMKEDYDES 120 AMRHGVPLSS VETNSVVPDS TSNPHIRPSK GTIELFSGPP IQVPTQFSTV DREARVLRYR 180 EKKKMRKFEK TIRYASRKAY AEARPRIKGR FAKRSDVELE VDQMFSNYVV VSEEGYGIVP 240 SF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 180 | 186 | REKKKMR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 1e-48 | CO-like family protein |