PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.227

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

CAMTA

Protein Properties

Length: 603aa MW: 68025.2 Da PI: 5.0865

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.227	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	166.4	4.8e-52	22	135	3	116
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlyc 83 + k+rwl+++ei +iL+n+ek++l+ +++++p+ gs++L+nr + ryfrkDG++w+kkkdgktvrE+he LKvg vl+c evm.model.AsparagusV1_05.227 22 EAKSRWLRPSEISEILQNHEKFHLHVDTPHKPPGGSWFLFNRGQNRYFRKDGHCWRKKKDGKTVREAHENLKVGDETVLHC 102 4599*************************************************************************** PP CG-1 84 yYahseenptfqrrcywlLeeelekivlvhyle 116 yYah+e+n+ fqrr+ywlL+++l+kivlvhy++ evm.model.AsparagusV1_05.227 103 YYAHGEDNKDFQRRTYWLLDKRLQKIVLVHYRD 135 *****************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence
MDNDNRNLAK TCNLTIEYFA LEAKSRWLRP SEISEILQNH EKFHLHVDTP HKPPGGSWFL 60 FNRGQNRYFR KDGHCWRKKK DGKTVREAHE NLKVGDETVL HCYYAHGEDN KDFQRRTYWL 120 LDKRLQKIVL VHYRDLSEKS KISSDTDPTT VSQGADPPRA ASSTSTHSSN FAIQESNPVH 180 DSLLNGSNLS HYADLASTSS EMLRTDQGID GMHDRIASEE INCPGNLTNI ITDSHLNLDV 240 EVNFPGNLTN IITDSHLNGD VEVRFDPLGE YSVFPSEHSS SITGGGEAQF QENRECVSCM 300 HGFPGVKNMV DVSSHAHHTF NDDHHFYGEP QFNNYSVSQA NSLGCEQHGE MYELDSYGNW 360 KGKETGQDFD NSLMTYAGSC NDTDTEGLPE FLYFDTDPAC SFAVEYPEVN WAANYDREKA 420 VVEPAVIEYP TAADSEWVGG NKGIDLTNHI SKLAYGEFGM GADFANFAAA DTSQSLQWQI 480 NGPVEGDEGY RPASSQSLSS VRNRSSIESE SWRSGETFRF SDEDLVVSSI NNHDHRQNIF 540 NGRRPVSDEN QQLYYEHQRY THLLKVHDQF VEKKQRKKYQ ANRPAGLAIP EPQSFSSAED 600 TK*

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence

MDNDNRNLAK TCNLTIEYFA LEAKSRWLRP SEISEILQNH EKFHLHVDTP HKPPGGSWFL  60
FNRGQNRYFR KDGHCWRKKK DGKTVREAHE NLKVGDETVL HCYYAHGEDN KDFQRRTYWL  120
LDKRLQKIVL VHYRDLSEKS KISSDTDPTT VSQGADPPRA ASSTSTHSSN FAIQESNPVH  180
DSLLNGSNLS HYADLASTSS EMLRTDQGID GMHDRIASEE INCPGNLTNI ITDSHLNLDV  240
EVNFPGNLTN IITDSHLNGD VEVRFDPLGE YSVFPSEHSS SITGGGEAQF QENRECVSCM  300
HGFPGVKNMV DVSSHAHHTF NDDHHFYGEP QFNNYSVSQA NSLGCEQHGE MYELDSYGNW  360
KGKETGQDFD NSLMTYAGSC NDTDTEGLPE FLYFDTDPAC SFAVEYPEVN WAANYDREKA  420
VVEPAVIEYP TAADSEWVGG NKGIDLTNHI SKLAYGEFGM GADFANFAAA DTSQSLQWQI  480
NGPVEGDEGY RPASSQSLSS VRNRSSIESE SWRSGETFRF SDEDLVVSSI NNHDHRQNIF  540
NGRRPVSDEN QQLYYEHQRY THLLKVHDQF VEKKQRKKYQ ANRPAGLAIP EPQSFSSAED  600
TK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	8e-49	CAMTA family protein