PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.2246

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 372aa MW: 40442.1 Da PI: 6.8035

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.2246	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.5e-09	195	243	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + sk Ka +L + ++Y++sLq evm.model.AsparagusV1_05.2246 195 NSHSLAERVRREKISERMKFLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 243 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MVDSFSSPLY NQQANPQISV GKSLPMSWNP SVLPPGLPNF PADSGFIERA VRFSCFNGGN 60 FSSMVNSPFA PSEQLSPYAS KGPSESPSPI NDDQRDNKRV SDEAGEVEFS GDVQKNSSSI 120 GNAAKKSKKS NLDMELDQVQ GVDATKENLE SKQKGEQNSS TGAATKSSGK NAKDGANGAK 180 EDYIHIRARR GQATNSHSLA ERVRREKISE RMKFLQELVP GCSKVTGKAV MLDEIINYVQ 240 SLQRQVEFLS MKLAAVNPRL DVNIESLLSK DLLQLRGGSS SAIGFLPEMI HPQSHNAQQD 300 LLQAGIAGMG NPSDTIRRAL NAQLTSMSGF KEPLHQMPNS WEDELHNIVQ MNFSSNPAFN 360 PQDSNAKPQN Y*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MVDSFSSPLY NQQANPQISV GKSLPMSWNP SVLPPGLPNF PADSGFIERA VRFSCFNGGN  60
FSSMVNSPFA PSEQLSPYAS KGPSESPSPI NDDQRDNKRV SDEAGEVEFS GDVQKNSSSI  120
GNAAKKSKKS NLDMELDQVQ GVDATKENLE SKQKGEQNSS TGAATKSSGK NAKDGANGAK  180
EDYIHIRARR GQATNSHSLA ERVRREKISE RMKFLQELVP GCSKVTGKAV MLDEIINYVQ  240
SLQRQVEFLS MKLAAVNPRL DVNIESLLSK DLLQLRGGSS SAIGFLPEMI HPQSHNAQQD  300
LLQAGIAGMG NPSDTIRRAL NAQLTSMSGF KEPLHQMPNS WEDELHNIVQ MNFSSNPAFN  360
PQDSNAKPQN Y*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	3e-86	bHLH family protein