PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.2233

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 444aa MW: 48236.8 Da PI: 6.3982

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.2233	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.5	5.1e-18	146	195	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR +iN++f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq evm.model.AsparagusV1_05.2233 146 RSKHSATEQRRRCKINDRFQILRELIPHS----DQKRDKASFLLEVIEYIRFLQ 195 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
VFSQDPRFPQ TAGDAGGARS TSRPEVVTCA RGPGLATKPE PDSGYGPYSG VAFTLWDAKD 60 SGARGQWPSP YAARATASFP SLSSSRNHQQ DKKQFMESGS RSSRGFDEDD EDDEVFGKRE 120 GTSRKVELTV KVDGKGGNDQ KATTPRSKHS ATEQRRRCKI NDRFQILREL IPHSDQKRDK 180 ASFLLEVIEY IRFLQERVQK YESTGWTEEN VKLVPWNTSQ VPGDGAADPA QVMKNGGHAS 240 GFMYSADDNR IQPVPGMLST AQNPLESDMS ADVPNKTVEN PVGFATKASS SPIPSQRNYA 300 SAERGAGAAQ PQQRLISDID NLASQSQSQW LRPSAPADYS VSSDNLNEQE ELTIDDGTIN 360 VSTSYSQNIL NTLNRALESS GIDLSQASIS VQINLGKRAS RRASTTSMSS AKELDDPLRH 420 SRVGSSGGDE SEQAPKRRKS NNI*

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

VFSQDPRFPQ TAGDAGGARS TSRPEVVTCA RGPGLATKPE PDSGYGPYSG VAFTLWDAKD  60
SGARGQWPSP YAARATASFP SLSSSRNHQQ DKKQFMESGS RSSRGFDEDD EDDEVFGKRE  120
GTSRKVELTV KVDGKGGNDQ KATTPRSKHS ATEQRRRCKI NDRFQILREL IPHSDQKRDK  180
ASFLLEVIEY IRFLQERVQK YESTGWTEEN VKLVPWNTSQ VPGDGAADPA QVMKNGGHAS  240
GFMYSADDNR IQPVPGMLST AQNPLESDMS ADVPNKTVEN PVGFATKASS SPIPSQRNYA  300
SAERGAGAAQ PQQRLISDID NLASQSQSQW LRPSAPADYS VSSDNLNEQE ELTIDDGTIN  360
VSTSYSQNIL NTLNRALESS GIDLSQASIS VQINLGKRAS RRASTTSMSS AKELDDPLRH  420
SRVGSSGGDE SEQAPKRRKS NNI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	2e-52	bHLH family protein