PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.2229
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family NF-YB
Protein Properties Length: 236aa    MW: 24789.1 Da    PI: 9.1297
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.2229genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB79.83.8e-254899152
                          NF-YB  1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasd 52
                                   vreqd+f+Pianv+rim+kv+P++ak  +daket+qecvse+isf+tsea+d
  evm.model.AsparagusV1_05.2229 48 VREQDAFMPIANVIRIMRKVVPSHAKSRDDAKETIQECVSEYISFITSEAND 99
                                   69************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MHGARSHTAP PATTYSNGSN TSLNLQPTNQ QRAAPISQAA AAEQQCAVRE QDAFMPIANV  60
IRIMRKVVPS HAKSRDDAKE TIQECVSEYI SFITSEANDA LPGVPPQVPR GSRGTSAAPS  120
AGPAPCLRRG PLGASGGDLG VAMQRRRPPQ MAAMPLAMGG DHLFISIAAA TGAAISLARV  180
WGARGWAEAG YFFLEGIRLM EEEARSSSHH SSRPSSLPSC CKDNSGAALL PRRCF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.28e-26NF-YB family protein