PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_05.2150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | NF-YC | ||||||||
Protein Properties | Length: 171aa MW: 19378.9 Da PI: 5.5997 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 166.1 | 4.4e-52 | 41 | 144 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkks 77 ql+ fw++q ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+k+ evm.model.AsparagusV1_05.2150 41 QLQLFWADQyreIEQTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKN 120 89*****99999******************************************************************** PP NF-YC 78 diaaavtrtdifdflvdivprdel 101 diaaa+trtd+fdflvd+ r+e evm.model.AsparagusV1_05.2150 121 DIAAAITRTDVFDFLVDNCAREEG 144 ******************999975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence |
MDPQGHGTPP PMNPAVQYPA GTPYAAFQHL YQQQQQQQNQ QLQLFWADQY REIEQTTDFK 60 NHNLPLARIK KIMKADEDVR MIAAEAPVVF ARACEMFILE LTHRGWAHAE ENKRRTLQKN 120 DIAAAITRTD VFDFLVDNCA REEGKEDGIA RTAMGVPAGA DPMAYYYVPQ * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 120 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.1 | 1e-63 | NF-YC family protein |