PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.2142
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 330aa    MW: 36348 Da    PI: 6.3725
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.2142genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.7e-191461148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   rg WT+eEd +l  +++q+G+++W++I++  g+ R++k+c++rw +yl
  evm.model.AsparagusV1_05.2142 14 RGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                                   89********************************************97 PP
2Myb_DNA-binding44.53.5e-1468110246
                                    SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    g ++  E++ +v+++   G++ W++Ia  ++ gRt++++k++w++
  evm.model.AsparagusV1_05.2142  68 GVFSDSEEQTIVKLHSVVGNR-WSLIAGQLP-GRTDNDVKNHWNT 110
                                    789******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MGRIPCCEKD NVKRGQWTPE EDNKLSSYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGVF SDSEEQTIVK LHSVVGNRWS LIAGQLPGRT DNDVKNHWNT KLKKKLLGKG  120
IDPVTHKPFS HLMAEIATTV PPLQVAHLAE AALGCFKDEM LHLLTKKRAD FPANGTDVGD  180
GTGFPYAMSP VEDKEETVQK IKLGLSRAIM QEPGTDKSWG LMENGEPSDG LPVVSMCDDD  240
LYRTIGDEFR YEGPSYANGE GSAWSQSMCT GSTCTGGGGT PDCHVLHEKH SDDEGVEAEG  300
KRRKIDAGLF GSDGVLWDLS DDLMMNHIV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-105MYB family protein