PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.2019

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

LSD

Protein Properties

Length: 478aa MW: 50406.6 Da PI: 5.1314

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.2019	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	31.8	2.3e-10	387	411	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrG +V+C++C+ + evm.model.AsparagusV1_05.2019 387 CGSCRQLLSYPRGIMHVKCPCCQII 411 **********************975 PP
2	zf-LSD1	46.7	5.1e-15	425	449	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr+lL+YP+GApsVRC++C +V evm.model.AsparagusV1_05.2019 425 CGKCRVLLMYPYGAPSVRCSSCRFV 449 **********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MDGSSPELSR PPGWEDFVPE PSVPSSPPPT IPDSVSSGKR MSSFAGTSPP PGWDNIGCQT 60 NPHPITENLE KIIDRPLEIS LPPSLETPGS LSNIHQVSEN LEKIIHGPPE TSIQLRLETP 120 DSTHNPLPYS VNLEKSMASL AETSPPPDQE NGGSQLNPLP GSVNIGKGNC SSPATSALLD 180 SKSTNAQPNP LPGSSNPDTS MGSSPEISPP PGWENGVSQP SPLPCSVKVE ESNCSSPVTS 240 PPPGLDITIP QPKPLLRPSN PDKSMDSSPV TSPPPGWESS HLPGSVNVEK SNCSSPIISA 300 PPGSEITNTQ PNPLPGSSNP EKSAGSSLEI SSLPGWENAV PQVNPSPGLL KLEKNMGNSP 360 EIRGPPSSEV IASKSAPILP EVGQMVCGSC RQLLSYPRGI MHVKCPCCQI INFVLEEHQV 420 GNVRCGKCRV LLMYPYGAPS VRCSSCRFVT EIRAHNVRPP LSVQQGRYEP PPQNHVH*

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MDGSSPELSR PPGWEDFVPE PSVPSSPPPT IPDSVSSGKR MSSFAGTSPP PGWDNIGCQT  60
NPHPITENLE KIIDRPLEIS LPPSLETPGS LSNIHQVSEN LEKIIHGPPE TSIQLRLETP  120
DSTHNPLPYS VNLEKSMASL AETSPPPDQE NGGSQLNPLP GSVNIGKGNC SSPATSALLD  180
SKSTNAQPNP LPGSSNPDTS MGSSPEISPP PGWENGVSQP SPLPCSVKVE ESNCSSPVTS  240
PPPGLDITIP QPKPLLRPSN PDKSMDSSPV TSPPPGWESS HLPGSVNVEK SNCSSPIISA  300
PPGSEITNTQ PNPLPGSSNP EKSAGSSLEI SSLPGWENAV PQVNPSPGLL KLEKNMGNSP  360
EIRGPPSSEV IASKSAPILP EVGQMVCGSC RQLLSYPRGI MHVKCPCCQI INFVLEEHQV  420
GNVRCGKCRV LLMYPYGAPS VRCSSCRFVT EIRAHNVRPP LSVQQGRYEP PPQNHVH*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-35	LSD family protein