PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.1983

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

E2F/DP

Protein Properties

Length: 303aa MW: 34518.1 Da PI: 6.6086

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.1983	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	75.2	6.6e-24	74	149	4	71
E2F_TDP 4 ksLrlltqkflklleksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++Lr +++ +++k+++ g++t+neva+e+++e d+kn+rRR+YD++NVL a+n+i+k +k+eirw+g evm.model.AsparagusV1_05.1983 74 WGLRRFSTI---VCRKVQAkGRTTYNEVADEIIAElssglcileqfDEKNIRRRVYDAFNVLIAINVIAK-DKKEIRWIG 149 79*****...**99**********************************************.*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MISSNHQIDL PDGLDEAHVN PQSGTSNGDT TGEDITPSSS DNMLRLDDSY IQEDGNIGTV 60 EKKKKKKASR IIGWGLRRFS TIVCRKVQAK GRTTYNEVAD EIIAELSSGL CILEQFDEKN 120 IRRRVYDAFN VLIAINVIAK DKKEIRWIGS PITKTEQVKH LEEAHVNMMS RIQTKTNYLR 180 ELERQLVDLQ NLMLRNQQLH QSGNVASEGI HLPFVLVRAH RKATVEIEIS EDAQLVHFDF 240 NESPYSLYNE QAILKMMRCP HVVEPEQTYR NSSIESLIND QSSRPLKSSL FSWNSEMMSM 300 KN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	90	KKKKKKASRIIGWGLRRFSTIVCRKVQAK
2	63	91	KKKKKKASRIIGWGLRRFSTIVCRKVQAK
3	64	92	KKKKKKASRIIGWGLRRFSTIVCRKVQAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03415.1	5e-69	E2F/DP family protein