PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_05.197 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | LBD | ||||||||
Protein Properties | Length: 110aa MW: 12161.4 Da PI: 4.6613 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 46.5 | 1.1e-14 | 2 | 62 | 41 | 101 |
DUF260 41 nvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 ++l + ++lp e+r +a+++++ eA +r+rdPvyG+vgvi+ lqqq+ +++ela++++++ evm.model.AsparagusV1_05.197 2 KILDIKQNLPVEQRGQAADAIASEAYWRVRDPVYGSVGVISLLQQQIYAVQSELAETQAQI 62 57888999************************************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence |
MKILDIKQNL PVEQRGQAAD AIASEAYWRV RDPVYGSVGV ISLLQQQIYA VQSELAETQA 60 QIALHSAQQQ QHRQQNQVQL ENHPYGLDDS QQFGLDQGPS GPQNPPNFP* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 1e-15 | LBD family protein |