PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.1878
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family HD-ZIP
Protein Properties Length: 755aa    MW: 84837.9 Da    PI: 6.4119
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.1878genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox681.2e-2197152156
                                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                    r+k +++t++q++e+e+lF+++++p++++r++L+kklgL+ rqVk+WFqNrR++ k
  evm.model.AsparagusV1_05.1878  97 RKKYHRHTAQQIREMEALFKESPHPDEKQRQQLSKKLGLSPRQVKFWFQNRRTQIK 152
                                    7999************************************************9877 PP
2START191.25.2e-602724926206
                                    HHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS
                          START   6 aaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWde 74 
                                    a++el+k+a+  ep+W +s     e++n+de+++ f+++ +        s+ea+r++g+v+    +lv+ ++d++ qW++
  evm.model.AsparagusV1_05.1878 272 ALDELIKMATTHEPLWIRSIetnrEILNYDEYRKAFVSEATsngsqnkLSVEASRETGMVFLGISKLVQAFMDVN-QWKK 350
                                    689*********************************9988899********************************.**** PP

                                    T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSE CS
                          START  75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvv 143
                                     ++    ka+t++vis+g      g lqlm++elq+l+p+vp R+ +fvR+++ql++ +w+i+dvS+d  ++   + ++v
  evm.model.AsparagusV1_05.1878 351 VFPcmisKASTVDVISEGesetrsGLLQLMFSELQMLTPVVPtRELYFVRQCKQLSDNRWAILDVSIDKIEESI-DVNLV 429
                                    ***********************************************************************987.9**** PP

                                    E-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                          START 144 RaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                    + +++pSg++ie+k+ngh+kv+wveh+++k+++++ ++rs+v+sgla+ga +w  tlq qce+
  evm.model.AsparagusV1_05.1878 430 KFRKRPSGCIIEEKANGHCKVIWVEHMEYKKNVIPTMYRSIVNSGLAFGAWHWIMTLQLQCER 492
                                    *************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    
MNKDFASPAL SLSLVSKISK FACHLIEVKF FNVIXXXXXX XEEVDERDEE SGGRGEMVEI  60
SSENTGPLGQ SDENLDVEGQ EEEDDEDAGD NCKRKKRKKY HRHTAQQIRE MEALFKESPH  120
PDEKQRQQLS KKLGLSPRQV KFWFQNRRTQ IKAMQERHEN SLLKSEMDKL REENHHMREA  180
MKKVSCPNCG FNTVSNDSAI TTEEQQLRIE NARLRAEIEK LQGKSGNLPE GTASLSSSWT  240
VGTDQNNRAT IKGYAGYLGL EKSKIMQIVD LALDELIKMA TTHEPLWIRS IETNREILNY  300
DEYRKAFVSE ATSNGSQNKL SVEASRETGM VFLGISKLVQ AFMDVNQWKK VFPCMISKAS  360
TVDVISEGES ETRSGLLQLM FSELQMLTPV VPTRELYFVR QCKQLSDNRW AILDVSIDKI  420
EESIDVNLVK FRKRPSGCII EEKANGHCKV IWVEHMEYKK NVIPTMYRSI VNSGLAFGAW  480
HWIMTLQLQC ERMMFFMATN VPAKESIGVS TLAGRRSILT LAERMCISFC HAMGGSRNRA  540
WTRVSTKSGD DISFTSRKNI SDPGEPLGLI VSAVSSTWLP VASPVLFEFL RDESRRTEWD  600
IILSRGPAET IVNLVKGKDR GNSITVHATK STERNCMWIL QDSCTNAYES MIVYAPVDSN  660
GMQKVLTGCD SSDMAILPSG FSILPDGIDS RPVVITSRPE ERSTEGGSLL TVAFQILASA  720
SPSAKVTMEI VENVNTLVSC TLQNIKRSLH CDDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19399KRKKRKK
29599KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein