PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.1559

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

SBP

Protein Properties

Length: 735aa MW: 82504.1 Da PI: 6.746

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.1559	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	39.2	1.8e-12	154	183	1	30
--SSTT-----TT--HHHHHTT--HHHHT- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhska 30 +Cqv++C+adls ak+yhrrhkvCe+h evm.model.AsparagusV1_05.1559 154 MCQVDDCRADLSGAKDYHRRHKVCEIHISD 183 6**************************764 PP

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence
MEGDVGAQVA PPIFLHQPHP IRFHDGPIHA KKRDFPWQNP NNSSYQQQQI NQWIPNPNTN 60 WNPRLWDWDS SKFTAKPSQN APNLPNLGSN DSQSKPRAEE AVKAQNLPKN LEEDGETLTL 120 NLGGGVYSAA QEQAVRPSKR VRSGSPGSRG NYPMCQVDDC RADLSGAKDY HRRHKVCEIH 180 ISDHSPSSSN SDAQDRTGRI IFKLFDKDPS KIPAALRSQI VNWLAHSPSE MESYIRPGCV 240 VLSIYASMPS FAWDELEGDL LHRINSLVQN SDSEFWIDGR FLVRTSRQLA SHKDGKVRLC 300 KSWRTWSAPE ITSVSPVAVV SGQETSLVLK GRNLTIPGTK IHCTFMGGYT SKEVLGSAYP 360 GTIYDDASVE SFTLPGGIPN SFGRCFIEVE NAFRGNSFPV IIANSNICQE LRALESEFEN 420 EVGTRDVTSE EQTQDNGRPR SREDLLHFLN ELGWLFQRKN SIDPRFMDFS TTRFKFLLTF 480 SIERDWSSLI RTLLDILAER SLNNDTLAQE SLEMLLEIQL LNRAVKRKCR KMVDLLLSYY 540 VIMGEPECSG SKIYLFPPNS VGPGGITPLH LAASTQDSED MVDALTNDPQ EIGMNCWNSI 600 LDESGQTPYM YASQRNNHFY NRLVARKLAD RKNCQVSINV EDEISMDKSW IVGEGEKVDT 660 VRTLEVTSCS KCAFMEKARG KRIGHTRGLL ERPYVHSMLA IAAVCVCVCL FFRGSPQIGS 720 VAPFKWENLD FGPR*

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence

MEGDVGAQVA PPIFLHQPHP IRFHDGPIHA KKRDFPWQNP NNSSYQQQQI NQWIPNPNTN  60
WNPRLWDWDS SKFTAKPSQN APNLPNLGSN DSQSKPRAEE AVKAQNLPKN LEEDGETLTL  120
NLGGGVYSAA QEQAVRPSKR VRSGSPGSRG NYPMCQVDDC RADLSGAKDY HRRHKVCEIH  180
ISDHSPSSSN SDAQDRTGRI IFKLFDKDPS KIPAALRSQI VNWLAHSPSE MESYIRPGCV  240
VLSIYASMPS FAWDELEGDL LHRINSLVQN SDSEFWIDGR FLVRTSRQLA SHKDGKVRLC  300
KSWRTWSAPE ITSVSPVAVV SGQETSLVLK GRNLTIPGTK IHCTFMGGYT SKEVLGSAYP  360
GTIYDDASVE SFTLPGGIPN SFGRCFIEVE NAFRGNSFPV IIANSNICQE LRALESEFEN  420
EVGTRDVTSE EQTQDNGRPR SREDLLHFLN ELGWLFQRKN SIDPRFMDFS TTRFKFLLTF  480
SIERDWSSLI RTLLDILAER SLNNDTLAQE SLEMLLEIQL LNRAVKRKCR KMVDLLLSYY  540
VIMGEPECSG SKIYLFPPNS VGPGGITPLH LAASTQDSED MVDALTNDPQ EIGMNCWNSI  600
LDESGQTPYM YASQRNNHFY NRLVARKLAD RKNCQVSINV EDEISMDKSW IVGEGEKVDT  660
VRTLEVTSCS KCAFMEKARG KRIGHTRGLL ERPYVHSMLA IAAVCVCVCL FFRGSPQIGS  720
VAPFKWENLD FGPR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein