PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_05.141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | ARR-B | ||||||||
Protein Properties | Length: 494aa MW: 55805 Da PI: 5.9748 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.3 | 7e-28 | 175 | 228 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt+eLH++Fv aveqL G ekA+Pk+ilelm+ + Lt+e+v+SHLQkYRl evm.model.AsparagusV1_05.141 175 KQRVVWTCELHQQFVAAVEQL-GVEKAVPKKILELMNNPTLTRENVASHLQKYRL 228 79*******************.********************************8 PP | |||||||
2 | Myb_DNA-binding | 40.9 | 4.8e-13 | 177 | 227 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r WT e+++++v av+qlG + +k+I + m+ ++t++++ s++qky+ evm.model.AsparagusV1_05.141 177 RVVWTCELHQQFVAAVEQLGVEkaVPKKILELMNnPTLTRENVASHLQKYR 227 678***********************************************7 PP | |||||||
3 | Response_reg | 69.8 | 1.1e-23 | 4 | 110 | 3 | 109 |
EESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS Response_reg 3 ivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahg 81 +vd +++ +++r +l++ +y +v++++ + +al++l++++ +Dl+l D+ mp+m+G++ll++i e +lp+i++++++ evm.model.AsparagusV1_05.141 4 VVDVDRTCVHIIRAMLQRCRY-QVTTCSRAMDALDILRANKgkFDLVLSDVHMPDMNGFRLLEHIGLEM-DLPVIMMSSED 82 688899999************.***************888888**********************6654.8********** PP THHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 82 eeedalealkaGakdflsKpfdpeelvk 109 e +++l +k Ga d+l Kp+ +++l + evm.model.AsparagusV1_05.141 83 EYDLVLMGVKHGACDYLIKPVRIDALKN 110 ************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence |
MSSVVDVDRT CVHIIRAMLQ RCRYQVTTCS RAMDALDILR ANKGKFDLVL SDVHMPDMNG 60 FRLLEHIGLE MDLPVIMMSS EDEYDLVLMG VKHGACDYLI KPVRIDALKN IWQHVVRKQR 120 NESKLKEVEY SGGSEDNDHH NKSFDENTST AIKRKREEEE EEKTEEREHM STTKKQRVVW 180 TCELHQQFVA AVEQLGVEKA VPKKILELMN NPTLTRENVA SHLQKYRLYL KRLKATQQQE 240 SGEAFFSNVP NSPLNQLPPQ ALMNLGQRRP INICFDQRGF FSPNPSFASS SNLSPMMMQQ 300 VNNNQILQTY GNLGFQATQG FASLPTNSFV KHSRQFSHDS MISNGISDHV LLRTGPTMNR 360 GQSFHGNYMN MQQYAAVPQA LYNVQGSIAP HASTGMIQES MTEAQGDFEV ATDIVNQDMI 420 SGNVGYGSIV SQDFNANLKE GAARSMRTFT KEIHIRAAYE EDGLLFDDDG LPDLISLWEN 480 KPGTDVLEPE VTY* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 3e-84 | ARR-B family protein |