PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.1361
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family HD-ZIP
Protein Properties Length: 264aa    MW: 29698 Da    PI: 4.4934
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.1361genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.41.5e-102391956
                                   HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                       Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                   F++++ p++ +r+ L++klg++  q+ +WFqN+R ++k
  evm.model.AsparagusV1_05.1361  2 FKQDSCPNEGQRQILSDKLGVDPLQINFWFQNKRNQQK 39
                                   999*******************************9988 PP
2START62.81.1e-204112295179
                                    EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                          START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                                     ae+q++splvp R+ vf+R+++++++  w+ivd S+ds+++        ++ + pSg++ie +s  + kv+w+e+v+++
  evm.model.AsparagusV1_05.1361  41 LAEYQFPSPLVPtRECVFLRFCKKMSDRCWAIVDFSLDSTDPCD----ARKCLRKPSGCIIEILSFEYLKVIWIENVEVD 116
                                    589***************************************98....488888************************** PP

                                    SSXXHH CS
                          START 174 grlphw 179
                                     + +h+
  evm.model.AsparagusV1_05.1361 117 NSFVHN 122
                                    *99975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
SFKQDSCPNE GQRQILSDKL GVDPLQINFW FQNKRNQQKV LAEYQFPSPL VPTRECVFLR  60
FCKKMSDRCW AIVDFSLDST DPCDARKCLR KPSGCIIEIL SFEYLKVIWI ENVEVDNSFV  120
HNSRIIKELD VDTSVDDDDA NPFYMINVQG GYPLVKDLNA KKIDQIVVGK ETEDTVSLLC  180
LRDMTFKEIS NKVIIILQES SFDVASSYAV FAPVMEKDMN QLMNGTDSGE VHLLPSGFAI  240
AADGPSLNRG SLVTVSFQII MDS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.22e-26HD-ZIP family protein