PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.1067

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

SBP

Protein Properties

Length: 265aa MW: 28870.2 Da PI: 8.4292

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.1067	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	50.3	6.2e-16	18	47	47	76
SSEEETTT--SS--S-STTTT-------S- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkk 76 rfh+l+efD++krsCrrrLa+hnerrrk+ evm.model.AsparagusV1_05.1067 18 VRFHQLHEFDQGKRSCRRRLAGHNERRRKP 47 59**************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MAHKVVCTSA SFFIILLVRF HQLHEFDQGK RSCRRRLAGH NERRRKPPPG PLSPRYGRLS 60 SSIYEDGSRF RSFLMDFSYP RTQSPPSRNL WPAVRSSERV AGGNQWLGNP AGPCHEIVTH 120 PYIHPSTHYT SELPPSECFA AGVTDSSCAL SLLSTQPWGT TSCAAPRNRA PNISASIGLG 180 GTPMGQPIIP SNHCMAHPWG FKNHGAGTSH HEIQHDMGLG HFDDDGNGQF SGELELALQG 240 NSQCPAHGPV RAYDHSGHGG HWSL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	1e-23	SBP family protein