PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_04.76 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB | ||||||||
Protein Properties | Length: 263aa MW: 30008.4 Da PI: 5.0762 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.1e-16 | 5 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed lv +++++G g+W++ ++ g+ R++k+c++rw +yl evm.model.AsparagusV1_04.76 5 KGPWTEDEDMVLVSYIQRYGHGNWRALPKQAGLLRCGKSCRLRWTNYL 52 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.4e-16 | 58 | 103 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l evm.model.AsparagusV1_04.76 58 RGNFSREEEDMIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 103 89********************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence |
MGLKKGPWTE DEDMVLVSYI QRYGHGNWRA LPKQAGLLRC GKSCRLRWTN YLRPDIKRGN 60 FSREEEDMII NLHEMLGNRW SAIAARLPGR TDNEIKNVWH THLKKRLQKP ADHSVQESNS 120 KVRPAESKTA QVESKSIKLI HQNSVEFASN PTVMQTIPIQ SSSEDNSTGS ISSNWSSSEI 180 SGYDMGYLRN ESMESLSQEH MATIDDSFWN EAFSMDLALV RGDASCNFDE QSDLNSLVYD 240 EDVEFWLRTF TEVGELHDFP EL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 4e-72 | MYB family protein |