PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.744

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 947aa MW: 103475 Da PI: 6.3009

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.744	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.00051	750	787	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i ++ eLre++P+ +Kls + Lek+++++ Lq evm.model.AsparagusV1_04.744 750 RQMIQDRVKELREIIPNG-----PKLSIDALLEKTIKHMLFLQ 787 67799999*******5.....5**************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 947 aa Download sequence
MGGLVKEVLR RLCVEFGWSY AVFWKLIGFG DQMNLVWEDG HCERTSVASA ASGFEAIDLL 60 IKESGVLRGS QNGGFSQLGG TEDRVRTLVF KLMATQVHLV GDGIVGKAAL TGKHEWMLGD 120 MLSNRGFTSK VLAEINNQLL AGIKTTAIIP VLPQGILQLG STQMLPENFG FIVHAKSLLG 180 QLQFVRGAVL SSDTQKILCQ KLVESTGMQT THKQYREART DINGASSVND DNHNHQHFSP 240 ALSRTFTEIC PSSTQLYDQM SAIVSETPLA KENMSSKMVP PSTQPIVETH HSQVDSGAQE 300 AHTMFSNPDA RLLQSILPCK SDSQNHQQSP TGLPYNRLAF LEEQLSMPSV RAGEFANNRE 360 STLANTNMLQ LLSYGCTSLQ PLQGSESISS FARSQLLESA NGIGKFNSFA SGIGSFRSQH 420 AESSSTELPQ VLNPIDHLEQ GHLNSIDTIF HSGSLREKQK SNDGQYQALE SQFTQYDEHG 480 SSYSPLLDPV QKNKAHQESP CVENGRDPTP AGSGNKSNEK AGNLQALDEK ISVSLLQSSS 540 ANDLFDALRL DQCKSGFSDS KLDNVKIHAA ENAHGLNTDV SNRITEFEEY LGYNALNNEL 600 FCSGMFSVAG SDQLLDAVVS QFNPGARYEM DDIASCKNPL TKISSSSTNG CATTCKKTHA 660 ETFSLPPVPI KPEPAPSSSL KSSCSIERSD GCISQSHGSY KSQINLWIEG QKMSNDNHSG 720 AHGKKVDEGG KQVRKRSRPG ENPRPRPKDR QMIQDRVKEL REIIPNGPKL SIDALLEKTI 780 KHMLFLQSVT KHADKLKEIG EPKILSKDGG LLLKDNFEGG ATWAFEVGSQ SMTCPIIVED 840 LNPPRQMLVE MLCEERGLFL EIADLVRGLG LTILKGAMEA RGDKIWARFA VEANRDVTRM 900 EIFLSLVQLL QPSATSNEIP EGLNTPQNMF HSPSSIPATG LSDRLW*

Sequence ? help Back to Top

Protein Sequence Length: 947 aa Download sequence

MGGLVKEVLR RLCVEFGWSY AVFWKLIGFG DQMNLVWEDG HCERTSVASA ASGFEAIDLL  60
IKESGVLRGS QNGGFSQLGG TEDRVRTLVF KLMATQVHLV GDGIVGKAAL TGKHEWMLGD  120
MLSNRGFTSK VLAEINNQLL AGIKTTAIIP VLPQGILQLG STQMLPENFG FIVHAKSLLG  180
QLQFVRGAVL SSDTQKILCQ KLVESTGMQT THKQYREART DINGASSVND DNHNHQHFSP  240
ALSRTFTEIC PSSTQLYDQM SAIVSETPLA KENMSSKMVP PSTQPIVETH HSQVDSGAQE  300
AHTMFSNPDA RLLQSILPCK SDSQNHQQSP TGLPYNRLAF LEEQLSMPSV RAGEFANNRE  360
STLANTNMLQ LLSYGCTSLQ PLQGSESISS FARSQLLESA NGIGKFNSFA SGIGSFRSQH  420
AESSSTELPQ VLNPIDHLEQ GHLNSIDTIF HSGSLREKQK SNDGQYQALE SQFTQYDEHG  480
SSYSPLLDPV QKNKAHQESP CVENGRDPTP AGSGNKSNEK AGNLQALDEK ISVSLLQSSS  540
ANDLFDALRL DQCKSGFSDS KLDNVKIHAA ENAHGLNTDV SNRITEFEEY LGYNALNNEL  600
FCSGMFSVAG SDQLLDAVVS QFNPGARYEM DDIASCKNPL TKISSSSTNG CATTCKKTHA  660
ETFSLPPVPI KPEPAPSSSL KSSCSIERSD GCISQSHGSY KSQINLWIEG QKMSNDNHSG  720
AHGKKVDEGG KQVRKRSRPG ENPRPRPKDR QMIQDRVKEL REIIPNGPKL SIDALLEKTI  780
KHMLFLQSVT KHADKLKEIG EPKILSKDGG LLLKDNFEGG ATWAFEVGSQ SMTCPIIVED  840
LNPPRQMLVE MLCEERGLFL EIADLVRGLG LTILKGAMEA RGDKIWARFA VEANRDVTRM  900
EIFLSLVQLL QPSATSNEIP EGLNTPQNMF HSPSSIPATG LSDRLW*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	5e-54	bHLH family protein