PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.674

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

Trihelix

Protein Properties

Length: 454aa MW: 52671.2 Da PI: 7.1056

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.674	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.7	6.8e-28	189	275	1	87
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstc 79 rW++qe+l+L+e+r++++++++ +++k+plW+evs+ m +e+g++rs k+Ckek++nl k+ykk+k+++++ +++ +++ evm.model.AsparagusV1_04.674 189 RWPRQETLTLLEIRTRLHHKFQHpAAQKAPLWDEVSRIMaEEHGYQRSGKKCKEKLDNLYKYYKKTKASNQS--NNHGKHY 267 8*******************7689*********999**************************9..577888 PP trihelix 80 pyfdqlea 87 ++f+qlea evm.model.AsparagusV1_04.674 268 RFFKQLEA 275 ******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MSRASSHDHE FNAKIQTLSR IRHRHIVRLL GFCSNHETNL LVYEYMPNGS LGELLHGKKG 60 GFLHWDARYK IAVEAAKGLC YLYHDCSPLI LHRDVKSNNI LLDSNLEAHV ADFGLAKFLQ 120 DSETSECMSA IAGSYGYIAL VRRWSIVFKL QEQWNARRKL KMLGSGANNA VDNNGGENCS 180 NGNEYSQGRW PRQETLTLLE IRTRLHHKFQ HPAAQKAPLW DEVSRIMAEE HGYQRSGKKC 240 KEKLDNLYKY YKKTKASNQS NNHGKHYRFF KQLEALCGEN NTANSLHITN KIPPSQPIQS 300 LDSSTSSEEE EDEQIKRDEI NAWSLKIKEL VEKQMRRLME AQESWMDKMV NSIERMEEER 360 ASRDEQWQKQ KLERYEQEER SWAFERAWIE ARDAALISAL ERFGCKCCDL KREESKKTRD 420 DNEDDVVSSR IAGVWADNDE IRDLIRELKD ISD*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MSRASSHDHE FNAKIQTLSR IRHRHIVRLL GFCSNHETNL LVYEYMPNGS LGELLHGKKG  60
GFLHWDARYK IAVEAAKGLC YLYHDCSPLI LHRDVKSNNI LLDSNLEAHV ADFGLAKFLQ  120
DSETSECMSA IAGSYGYIAL VRRWSIVFKL QEQWNARRKL KMLGSGANNA VDNNGGENCS  180
NGNEYSQGRW PRQETLTLLE IRTRLHHKFQ HPAAQKAPLW DEVSRIMAEE HGYQRSGKKC  240
KEKLDNLYKY YKKTKASNQS NNHGKHYRFF KQLEALCGEN NTANSLHITN KIPPSQPIQS  300
LDSSTSSEEE EDEQIKRDEI NAWSLKIKEL VEKQMRRLME AQESWMDKMV NSIERMEEER  360
ASRDEQWQKQ KLERYEQEER SWAFERAWIE ARDAALISAL ERFGCKCCDL KREESKKTRD  420
DNEDDVVSSR IAGVWADNDE IRDLIRELKD ISD*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	4e-47	Trihelix family protein