PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_04.651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | C2H2 | ||||||||
Protein Properties | Length: 278aa MW: 32126.8 Da PI: 7.7726 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.9 | 8.7e-06 | 136 | 155 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ evm.model.AsparagusV1_04.651 136 FACHVCNKTFNRYNNMQMHM 155 78*****************9 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 220 | 242 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k+F + + ++H +++ evm.model.AsparagusV1_04.651 220 FKCRKCSKPFAVRGDWRTHEKNC 242 89*****************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence |
MGLRNLSMDY DYDLGLCFQY PPSLFEWLNS QSRSIPSSQK QEDEMQCLPL INMLEEPKKP 60 NIKEEVKEEV NQEKVTVSLK LGLPGDSESF DGEKTVDNIA CYKEEEEVEE EVEEINEEVK 120 YWIPTPTQIL IGPVQFACHV CNKTFNRYNN MQMHMWGHGS EYRKGPDSLK GTQPMAILKL 180 PCYCCALGCK NNIGHPRAKP LKDFRTLQTH YKRKHGVKPF KCRKCSKPFA VRGDWRTHEK 240 NCGKLWFCSC GSEFKHKRSL NDHVRSFGKD HSPCLMH* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20880.1 | 4e-96 | C2H2 family protein |