PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_04.591 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | C3H | ||||||||
Protein Properties | Length: 174aa MW: 19099.5 Da PI: 4.7621 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17 | 1.1e-05 | 127 | 151 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C f+ ++G C+ G+ C + H+ evm.model.AsparagusV1_04.591 127 ERPVCFFYDAYGLCQKGPACLYDHP 151 6899********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence |
MENTEDTIAS NGSEPAESSS KAIESNAGEI VEWLGVFSGM VLDYCLCLLR IWRDSLSLLK 60 PAAANASSPS IQNAGNTQAP SMISTNHTSN YGQAFSEEVL EQLLRDPQIV DMITVPKTPT 120 GLPLRPERPV CFFYDAYGLC QKGPACLYDH PYPYNPSQHR VVATREGQIN RRY* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16540.1 | 1e-09 | C3H family protein |