PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_04.532 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | Trihelix | ||||||||
Protein Properties | Length: 257aa MW: 28775.8 Da PI: 8.4898 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 25.9 | 2.5e-08 | 77 | 116 | 41 | 85 |
trihelix 41 rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 r+ rs++qC++kw+nl +++kk++++e++ +++s + ++ evm.model.AsparagusV1_04.532 77 RPRCRSQNQCNDKWDNLLRDFKKVTHHESEPDKPKS-----YWEM 116 55569************************9655444.....4444 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence |
MSNPPISTQT PPSSSSSPSP LNPDYRKGNG LLQENPNPNH RKRLDDARRS EPNGPTIIAA 60 TGRSPSSGEV DRELLLRPRC RSQNQCNDKW DNLLRDFKKV THHESEPDKP KSYWEMERVE 120 RKEKGLPSNF GVEVFEALRD VVGRRKESPD TSETSDSGQA ADTAEPDPKR QKVRDTGSSL 180 IEGASMIART LLSCEEKQEK RHRDLIQLHE RRLRLESDRI ELNRQGFAGL ISAVSSLSSA 240 IHAVSRRDYQ NNGDAS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 2e-16 | Trihelix family protein |